Plasmid CP067891.1

Sequence

Nucleotide Information

Accession CP067891.1
Description Klebsiella pneumoniae strain ARLG-3199 plasmid pC253_1, complete sequence
Source insd
Topology circular
Length 193360 bp
GC Content 0.52 %
Created at NCBI March 2, 2022



Assembly

Genome Data Information

Accession GCF_022438945.1
Assembly Coverage 178


Biosample

Curated Collection Information
Accession 15868971

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,South
Original Query Type name
Coordinates (Lat/Lon) 33.31/-118.34
Address USA,South

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP067872.1 See Comparison
CP067762.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
CP067679.1 See Comparison
CP067638.1 See Comparison
CP067593.1 See Comparison
CP067537.1 See Comparison
NZ_CP029136.1 See Comparison
CP052477.1 See Comparison
CP052415.1 See Comparison
NZ_CP069047.1 See Comparison
CP067872.1 See Comparison
CP067762.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
CP067679.1 See Comparison
CP067638.1 See Comparison
CP067593.1 See Comparison
NZ_CP029136.1 See Comparison
CP052477.1 See Comparison
NZ_CP069047.1 See Comparison
CP067537.1 See Comparison
CP052415.1 See Comparison
CP067679.1 See Comparison
CP067872.1 See Comparison
CP067638.1 See Comparison
CP067593.1 See Comparison
CP067762.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
CP067537.1 See Comparison
NZ_CP069047.1 See Comparison
CP052477.1 See Comparison
CP052415.1 See Comparison
NZ_CP029136.1 See Comparison
NZ_CP029136.1 See Comparison
CP067679.1 See Comparison
CP067638.1 See Comparison
CP067593.1 See Comparison
CP067537.1 See Comparison
CP067872.1 See Comparison
CP067762.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
NZ_CP069047.1 See Comparison
CP052477.1 See Comparison
CP052415.1 See Comparison
CP067638.1 See Comparison
CP067891.1 See Comparison
CP067872.1 See Comparison
CP067762.1 See Comparison
CP067593.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
CP067537.1 See Comparison
CP067679.1 See Comparison
NZ_CP029136.1 See Comparison
CP052477.1 See Comparison
CP052415.1 See Comparison
CP067593.1 See Comparison
NZ_CP069047.1 See Comparison
CP067762.1 See Comparison
CP067753.1 See Comparison
CP067537.1 See Comparison
CP067737.1 See Comparison
CP067872.1 See Comparison
CP052477.1 See Comparison
NZ_CP029136.1 See Comparison
CP067679.1 See Comparison
CP067638.1 See Comparison
CP052415.1 See Comparison
CP067593.1 See Comparison
CP067872.1 See Comparison
CP067762.1 See Comparison
NZ_CP069047.1 See Comparison
CP067753.1 See Comparison
CP067737.1 See Comparison
CP067679.1 See Comparison
CP067638.1 See Comparison
CP067537.1 See Comparison
CP052477.1 See Comparison
NZ_CP029136.1 See Comparison
CP052415.1 See Comparison
NZ_CP069047.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoDcopy
amrfinderpluspcoScopy
amrfinderpluspcoRcopy
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderplussilFcopy
amrfinderplussilRcopy
amrfinderplussilBcopy
amrfinderplussilAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 194 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.30710001325
repliconCP017721_00179rep_cluster_2183121620122447minus81.928960699
replicon000132__HG969996IncFII122482122716plus99.5741007.44e-118429
relaxaseNC_021231_00058MOBF129830135088minus98.17510003370
relaxaseCP035180_00077MOBF135100135852minus97.61980402
mate-pair-formationNC_021502_00150MPF_T135091137397minus97.79210001432
mate-pair-formationNC_019155_00032MPF_F139217142060minus99.8959901853
mate-pair-formationNC_019165_00034MPF_F142063143430minus1001000843
mate-pair-formationNC_021654_00016MPF_F146230148233minus10010001292
mate-pair-formationNC_019389_00080MPF_F148233148868minus96.6981003.2499999999999997e-135424
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2