Plasmid CP067798.1

Sequence

Nucleotide Information

Accession	CP067798.1
Description	Klebsiella pneumoniae strain ARLG-3241 plasmid pC295_2, complete sequence
Source	insd
Topology	circular
Length	158219 bp
GC Content	0.52 %
Created at NCBI	March 2, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Assembly

Genome Data Information

Accession	GCF_022438425.1
Assembly Coverage	241

Biosample

Curated Collection Information

Accession	15868998

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	USA,South
Original Query Type	name
Coordinates (Lat/Lon)	33.31/-118.34
Address	USA,South

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP067798.1	See Comparison

Plasmid Visualization

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Purples

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Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	blaKPC-2		copy
amrfinderplus	blaSHV-12		copy
amrfinderplus	blaTEM-1		copy
amrfinderplus	merC		copy
rgi	OXA-9		copy
rgi	OXA-9		copy
PGAG	replication initiation protein		copy
PGAG	AAA family ATPase		copy
PGAG	ParB/RepB/Spo0J family partition protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 204 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

relaxase	NC_020552_00059	MOBP	36118	37275	plus	100	100	0	757
replicon	000097__NC_025166_00051	IncFIB	1	897	plus	100	100	0	1657
replicon	000221__NC_025130_00012	IncX3	30007	30879	minus	100	100	0	1613
replicon	CP033468_00001	rep_cluster_2183	93987	94814	minus	82.289	96	0	715
replicon	000129__CP018340	IncFII	94849	95083	plus	99.574	100	7.44e-118	429
relaxase	NC_021231_00058	MOBF	100130	105388	minus	97.091	100	0	3333
relaxase	CP035180_00077	MOBF	105400	106155	minus	91.27	98	0	366
mate-pair-formation	NC_023277_00163	MPF_T	39916	42066	plus	90.237	100	0	1337
mate-pair-formation	NC_019157_00029	MPF_T	44337	45380	plus	99.713	99	0	638
mate-pair-formation	NC_019157_00030	MPF_T	45578	46303	plus	100	100	1.22e-145	456
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 24 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2