Plasmid CP067589.1

Sequence

Nucleotide Information

Accession CP067589.1
Description Klebsiella pneumoniae strain ARLG-4871 plasmid pC603_1, complete sequence
Source insd
Topology circular
Length 237925 bp
GC Content 0.52 %
Created at NCBI March 1, 2022



Assembly

Genome Data Information

Accession GCF_022434915.1
Assembly Coverage 323


Biosample

Curated Collection Information
Accession 15869043

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,South
Original Query Type name
Coordinates (Lat/Lon) 33.31/-118.34
Address USA,South

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaadA2copy
amrfinderplusdfrA12copy
amrfinderplusdfrA14copy
amrfinderplushsp20copy
amrfinderplusblaTEM-1copy
amrfinderpluspcoDcopy
amrfinderplusclpKcopy
rgimphAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 254 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_021231_00058MOBF2908834343minus95.9510003296
relaxaseCP035180_00077MOBF3435535107minus92.431000385
mate-pair-formationNC_021502_00150MPF_T3434636652minus99.35110001449
mate-pair-formationNC_014312_00141MPF_F3927142090minus10010001882
mate-pair-formationNC_019165_00034MPF_F4209343448minus95.575990801
mate-pair-formationNC_021654_00016MPF_F4634248303minus98.3189801234
mate-pair-formationNC_019389_00080MPF_F4835648991minus97.6421001.84e-136428
mate-pair-formationNC_022609_00081MPF_F4900749993minus91.8181000614
mate-pair-formationNC_014312_00128MPF_F5042951061minus1001001.31e-126400
mate-pair-formationNC_021502_00131MPF_T5145354089minus97.04210001762
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2