Plasmid CP066322.1

Sequence

Nucleotide Information

Accession CP066322.1
Description Salmonella enterica strain UWI_PP98 isolate CFSAN103862 plasmid pUWI-PP98.1, complete sequence
Source insd
Topology circular
Length 144839 bp
GC Content 0.49 %
Created at NCBI Dec. 18, 2020



Assembly

Genome Data Information

Accession GCA_015247435.2
Assembly Coverage 125


Biosample

Curated Collection Information
Accession 16678597

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Trinidad and Tobago
Original Query Type name
Coordinates (Lat/Lon) 10.87/-60.98
Address Trinidad and Tobago

ECOSYSTEM
Original Query environmental,environment
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130127.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison
CP119493.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130127.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison
CP119493.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130127.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison
NZ_CP130127.1 See Comparison
CP119493.1 See Comparison
NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
CP119493.1 See Comparison
NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130127.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison
CP066322.1 See Comparison
CP119493.1 See Comparison
CP119493.1 See Comparison
NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130275.1 See Comparison
NZ_CP130104.1 See Comparison
NZ_CP130092.1 See Comparison
NZ_CP130077.1 See Comparison
NZ_CP130074.1 See Comparison
NZ_CP130116.1 See Comparison
NZ_CP130084.1 See Comparison
NZ_CP130110.1 See Comparison
NZ_CP130127.1 See Comparison
NZ_CP130113.1 See Comparison
NZ_CP130107.1 See Comparison
NZ_CP130097.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore