Plasmid CP063573.1

Sequence

Nucleotide Information

Accession CP063573.1
Description Enterococcus faecium strain BMT-1-1-11 plasmid pIN-1-11_05, complete sequence
Source insd
Topology circular
Length 4375 bp
GC Content 0.37 %
Created at NCBI April 4, 2022



Assembly

Genome Data Information

Accession GCA_022811225.1
Assembly Coverage 469.7


Biosample

Curated Collection Information
Accession 16483162

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.33N;10.1E
Original Query Type coordinates
Coordinates (Lat/Lon) 53.33/10.10
Address Zum Woldberg, Winsen (Luhe), Harburg, Lower Saxony, 21423, Germany

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bone marrow transplant
DOID/SYMP
  • Bone marrow disease (DOID:4961 )
    • A hematopoietic system disease that is located_in the bone marrow.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore