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Plasmid CP057749.1
Sequence
Nucleotide Information
Accession
CP057749.1
Description
Citrobacter freundii strain RHB16-C09 plasmid pRHB16-C09_4, complete sequence
Source
insd
Topology
circular
Length
51549 bp
GC Content
0.45 %
Created at NCBI
July 29, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Citrobacter freundii (546)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Citrobacter (544)
Species
Citrobacter_freundii (546)
Strain
Biosample
Curated Collection Information
Accession
15148135
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Pooled pig faecal samples collected from floor of farm
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Sus scrofa (
9823
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
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Plasmids from same Biosample
CP057750.1
CP057748.1
CP057747.1
Similar Plasmids
based on Mash distance
NC_019013.1
See Comparison
CP055705.1
See Comparison
NZ_CP060077.1
See Comparison
NC_019013.1
See Comparison
CP055705.1
See Comparison
NC_019013.1
See Comparison
NZ_CP060077.1
See Comparison
CP055705.1
See Comparison
CP055705.1
See Comparison
NC_019013.1
See Comparison
CP057749.1
See Comparison
NZ_CP060077.1
See Comparison
NZ_CP060077.1
See Comparison
NC_019013.1
See Comparison
NC_019013.1
See Comparison
CP055705.1
See Comparison
NZ_CP060077.1
See Comparison
CP055705.1
See Comparison
NZ_CP060077.1
See Comparison
Identical Plasmids
100% Sequence Identity
CP055705.1
Sequence
Accession
:
CP055705.1
Description
: Citrobacter freundii strain RHB16-C02 plasmid pRHB16-C02_4, complete sequence
Source
: insd
Created at NCBI
: July 24, 2020
Host Taxonomy
Assigned Host
:
Citrobacter freundii (546)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Citrobacter (544)
Species
:
Citrobacter_freundii (546)
Strain
:
Biosample
Accession
:
15148130
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: culture,Pooled pig faecal samples collected from floor of farm
Classification
: cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Sus scrofa (
9823
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore