Plasmid CP057558.1
Sequence
Nucleotide Information
| Accession | CP057558.1 |
|---|---|
| Description | Escherichia coli strain RHB23-C04 plasmid pRHB23-C04_4, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 4721 bp |
| GC Content | 0.41 % |
| Created at NCBI | July 29, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15148211 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 54.70/-3.28 |
| Address | United Kingdom |
ECOSYSTEM
| Original Query | culture,Pooled sheep faecal samples collected from floor of farm |
|---|---|
| Classification | anthropogenic,cell_culture,farm,soil |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | protein phosphatase 2C family protein | copy | ||
| PGAG | nucleotidyl transferase AbiEii/AbiGii toxin family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| MOB-typer | MOBF | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2350 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 8 of 8 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | KT950740 | MOBF | 2424 | 2680 | minus | 96.512 | 89 | 1.21e-116 | 425 |
| oriT | NC_019986 | MOB_unknown | 2804 | 2908 | minus | 94.286 | 100 | 4.87e-36 | 156 |
| oriT | CP018844 | MOBP | 3211 | 3294 | minus | 100 | 100 | 3.79e-36 | 156 |
| replicon | CP035723_00002 | rep_cluster_2350 | 3306 | 3865 | plus | 94.484 | 100 | 0 | 861 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |