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v. 2024_05_31_v2
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Typing
Plasmid CP057416.1
Sequence
Nucleotide Information
Accession
CP057416.1
Description
Escherichia coli strain RHB27-C20 plasmid pRHB27-C20_9, complete sequence
Source
insd
Topology
circular
Length
1948 bp
GC Content
0.46 %
Created at NCBI
July 28, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCA_013831265.1
Assembly Coverage
146.358
Biosample
Curated Collection Information
Accession
15148263
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Pooled pig faecal samples collected from floor of farm
Classification
cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Sus scrofa (
9823
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP057415.1
CP057414.1
CP057413.1
CP057412.1
CP057411.1
CP057410.1
CP057409.1
Similar Plasmids
based on Mash distance
CP057084.1
See Comparison
CP057416.1
See Comparison
CP057084.1
See Comparison
CP057084.1
See Comparison
CP057084.1
See Comparison
CP057084.1
See Comparison
CP057084.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore