Plasmid CP057382.1

Sequence

Nucleotide Information

Accession CP057382.1
Description Escherichia coli strain RHB28-C11 plasmid pRHB28-C11_3, complete sequence
Source insd
Topology circular
Length 81771 bp
GC Content 0.51 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013830125.1
Assembly Coverage 155.06


Biosample

Curated Collection Information
Accession 15148268

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgitetRcopy
amrfinderplussilBcopy
amrfinderplustet(B)copy
amrfinderplussilFcopy
amrfinderplussilCcopy
amrfinderplussilRcopy
amrfinderplussilAcopy
amrfinderplussilScopy
amrfinderplusaph(6)-Idcopy
amrfinderplusaph(3'')-Ibcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 105 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP000430MOBF6964869937minus99.6551002.5e-148531
replicon000095__NZ_CP014273_00094IncFIB1978plus98.56910001729
repliconCP022610_00144IncFIA3546036317minus98.36810001507
repliconAP001918IncFIC3631536811plus94.1881000760
mate-pair-formation08-5333_00200MPF_Unknown4475446904minus96.88310001465
relaxaseNC_017627_00068MOBF3948444751minus97.66510003354
mate-pair-formationNC_009837_00049MPF_F4846251416minus95.0359901867
mate-pair-formationNC_009837_00049MPF_F5141652630minus98.765990783
mate-pair-formationNC_010488_00021MPF_F5524357048minus99.66810001184
mate-pair-formationNC_018966_00040MPF_F5704857638minus98.985931.21e-127403
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2