Plasmid CP056960.1

Sequence

Nucleotide Information

Accession CP056960.1
Description Escherichia coli strain RHB41-C22 plasmid pRHB41-C22_6, complete sequence
Source insd
Topology circular
Length 4073 bp
GC Content 0.44 %
Created at NCBI July 28, 2020



Assembly

Genome Data Information

Accession GCA_013801205.1
Assembly Coverage 147.447


Biosample

Curated Collection Information
Accession 15148430

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
NZ_AP027614.1 See Comparison
CP057676.1 See Comparison
CP056281.1 See Comparison
CP066200.1 See Comparison
NZ_CP062912.1 See Comparison
NZ_CP060520.1 See Comparison
NC_014543.1 See Comparison
NC_011227.1 See Comparison
NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
CP057676.1 See Comparison
NZ_AP027614.1 See Comparison
NZ_CP062912.1 See Comparison
CP056281.1 See Comparison
CP066200.1 See Comparison
NC_014543.1 See Comparison
NC_011227.1 See Comparison
NZ_CP060520.1 See Comparison
CP066200.1 See Comparison
NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
CP057676.1 See Comparison
NZ_AP027614.1 See Comparison
CP056281.1 See Comparison
NC_014543.1 See Comparison
NZ_CP062912.1 See Comparison
NZ_CP060520.1 See Comparison
NZ_CP148274.1 See Comparison
NC_011227.1 See Comparison
NZ_CP148281.1 See Comparison
CP057676.1 See Comparison
NZ_AP027614.1 See Comparison
CP056281.1 See Comparison
CP066200.1 See Comparison
NZ_CP062912.1 See Comparison
NC_014543.1 See Comparison
NZ_CP060520.1 See Comparison
NC_011227.1 See Comparison
NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
CP057676.1 See Comparison
NZ_AP027614.1 See Comparison
CP056281.1 See Comparison
NZ_CP062912.1 See Comparison
NC_014543.1 See Comparison
CP066200.1 See Comparison
NC_011227.1 See Comparison
NZ_CP060520.1 See Comparison
CP066200.1 See Comparison
NZ_AP027614.1 See Comparison
CP057676.1 See Comparison
CP056960.1 See Comparison
NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
CP056281.1 See Comparison
NZ_CP060520.1 See Comparison
NZ_CP062912.1 See Comparison
NC_011227.1 See Comparison
NC_014543.1 See Comparison
NZ_CP148274.1 See Comparison
NZ_CP148281.1 See Comparison
CP056281.1 See Comparison
NZ_AP027614.1 See Comparison
NZ_CP062912.1 See Comparison
CP066200.1 See Comparison
CP057676.1 See Comparison
NZ_CP060520.1 See Comparison
NC_014543.1 See Comparison
NC_011227.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2