Plasmid CP056670.1

Sequence

Nucleotide Information

Accession CP056670.1
Description Klebsiella oxytoca strain RHBSTW-00651 plasmid pRHBSTW-00651_3, complete sequence
Source insd
Topology circular
Length 64431 bp
GC Content 0.55 %
Created at NCBI July 27, 2020



Biosample

Curated Collection Information
Accession 15148673

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Wastewater effluent sample
Classification cell_culture,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGtapcopy
PGAGreplication initiation proteincopy
PGAGNYN domain-containing proteincopy
PGAGHNH endonucleasecopy
PGAGcytoplasmic proteincopy
PGAGDUF2913 family proteincopy
PGAGRpn family recombination-promoting nuclease/putative transposasecopy
PGAGhypothetical proteincopy
PGAGrecombinase family proteincopy
PGAGParA family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 94 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP024544_00079MOBF5368358941plus97.71810003351
mate-pair-formationNC_014312_00116MPF_F2981530117plus96.041001.6500000000000001e-59202
mate-pair-formationNC_014312_00118MPF_F3069331430plus91.871006.67e-147460
mate-pair-formationNC_023332_00154MPF_F3143332851plus89.031000732
mate-pair-formationNC_021502_00131MPF_T3661739253plus97.72510001776
mate-pair-formationNC_014312_00128MPF_F3964540262plus98.544981.88e-120382
mate-pair-formationNC_022609_00081MPF_F4028241271plus99.6971000685
mate-pair-formationNC_019389_00080MPF_F4128741922plus98.1131009.38e-137429
mate-pair-formationNC_021654_00016MPF_F4197543936plus94.0379801187
mate-pair-formationNC_019165_00034MPF_F4637647731plus91.372990769
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2