Plasmid CP056628.1

Sequence

Nucleotide Information

Accession CP056628.1
Description Escherichia coli strain RHBSTW-00304 plasmid pRHBSTW-00304_4, complete sequence
Source insd
Topology circular
Length 4075 bp
GC Content 0.45 %
Created at NCBI July 27, 2020



Assembly

Genome Data Information

Accession GCA_013742835.1
Assembly Coverage 105.394


Biosample

Curated Collection Information
Accession 15148566

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Wastewater influent sample
Classification cell_culture,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP099119.1 See Comparison
NZ_OP242312.1 See Comparison
NZ_CP107725.1 See Comparison
NZ_CP104684.1 See Comparison
NZ_CP010162.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP147136.1 See Comparison
NZ_CP107725.1 See Comparison
NZ_CP104684.1 See Comparison
CP099119.1 See Comparison
NZ_OP242312.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
NZ_CP147136.1 See Comparison
NZ_CP010162.1 See Comparison
NZ_CP147136.1 See Comparison
CP056628.1 See Comparison
NZ_OP242312.1 See Comparison
NZ_CP107725.1 See Comparison
CP099119.1 See Comparison
NZ_CP104684.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
NZ_CP010162.1 See Comparison
CP099119.1 See Comparison
NZ_CP107725.1 See Comparison
NZ_OP242312.1 See Comparison
NZ_OP242312.1 See Comparison
CP099119.1 See Comparison
NZ_CP104684.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
NZ_CP010162.1 See Comparison
NZ_CP147136.1 See Comparison
NZ_CP104684.1 See Comparison
NZ_CP107725.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
CP099119.1 See Comparison
NZ_CP147136.1 See Comparison
NZ_CP010162.1 See Comparison
NZ_OP242312.1 See Comparison
NZ_CP104684.1 See Comparison
NZ_CP107725.1 See Comparison
NZ_CP081722.1 See Comparison
NZ_CP081746.1 See Comparison
NZ_CP081727.1 See Comparison
NZ_CP081765.1 See Comparison
NZ_CP010162.1 See Comparison
NZ_CP147136.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore