Plasmid CP056405.1

Sequence

Nucleotide Information

Accession CP056405.1
Description Escherichia coli strain RHBSTW-00562 plasmid pRHBSTW-00562_2, complete sequence
Source insd
Topology circular
Length 68855 bp
GC Content 0.51 %
Created at NCBI July 27, 2020



Assembly

Genome Data Information

Accession GCA_013739975.1
Assembly Coverage 93.1725


Biosample

Curated Collection Information
Accession 15148652

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Freshwater sample from downstream of wastewater treatment plant
Classification aquatic,cell_culture,freshwater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP056405.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGtapcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGplasmid stabilization proteincopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
PGAGhypothetical proteincopy
PGAGpentapeptide repeat-containing proteincopy
PGAGATP-binding cassette domain-containing proteincopy
PGAGmcbEcopy
PGAGYcaO-like family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 103 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017627_00068MOBF5838163648plus97.32310003351
mate-pair-formationNC_022651_00077MPF_F3102631334plus99.029991.23e-63214
mate-pair-formationNC_010409_00124MPF_F3191232637plus98.761004.18e-156486
mate-pair-formationNC_019094_00090MPF_F3264034049plus96.815970855
mate-pair-formationNC_017639_00094MPF_F3495135463plus90.0581005.22e-89290
mate-pair-formationNC_013437_00116MPF_T3750340118plus91.0559901641
mate-pair-formationNC_007675_00027MPF_F4050441133plus98.571971.43e-134423
mate-pair-formationNC_017639_00100MPF_F4113342089plus98.746910605
mate-pair-formationNC_019037_00027MPF_F4306843703plus95.2831003e-134422
mate-pair-formationNC_019094_00068MPF_F4451846365plus93.66910001127
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2