Plasmid CP055671.1
Sequence
Nucleotide Information
Accession | CP055671.1 |
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Description | Escherichia coli strain RHB30-C19 plasmid pRHB30-C19_3, complete sequence |
Source | insd |
Topology | circular |
Length | 85551 bp |
GC Content | 0.48 % |
Created at NCBI | July 24, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 15148297 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | United Kingdom |
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Original Query Type | name |
Coordinates (Lat/Lon) | 54.70/-3.28 |
Address | United Kingdom |
ECOSYSTEM
Original Query | culture,Pooled pig faecal samples collected from floor of farm |
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Classification | cell_culture,fecal,gastrointestinal_system,host_associated |
Host-associated Taxon |
|
DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | RepB family plasmid replication initiator protein | copy | ||
PGAG | ParA family protein | copy | ||
PGAG | ParB/RepB/Spo0J family partition protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | baseplate protein | copy | ||
PGAG | IS4-like element IS421 family transposase | copy | ||
PGAG | hokD | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 80 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000230__CP009168_00001 | IncY | 1 | 861 | plus | 99.187 | 100 | 0 | 1552 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
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