Plasmid CP055671.1

Sequence

Nucleotide Information

Accession CP055671.1
Description Escherichia coli strain RHB30-C19 plasmid pRHB30-C19_3, complete sequence
Source insd
Topology circular
Length 85551 bp
GC Content 0.48 %
Created at NCBI July 24, 2020



Assembly

Genome Data Information

Accession GCF_013596065.1
Assembly Coverage 168.685


Biosample

Curated Collection Information

Accession 15148297

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample




Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGRepB family plasmid replication initiator proteincopy
PGAGParA family proteincopy
PGAGParB/RepB/Spo0J family partition proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGbaseplate proteincopy
PGAGIS4-like element IS421 family transposasecopy
PGAGhokDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 80 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000230__CP009168_00001IncY1861plus99.18710001552
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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