Plasmid CP054333.1

Sequence

Nucleotide Information

Accession CP054333.1
Description Escherichia coli strain SCU-121 plasmid pSCU-121-5, complete sequence
Source insd
Topology circular
Length 3749 bp
GC Content 0.52 %
Created at NCBI June 10, 2020



Assembly

Genome Data Information

Accession GCA_013315915.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 14609781

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,whole organism,rectal swab from healthy college student
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OX359178.1 See Comparison
NZ_OX359186.1 See Comparison
NZ_CP103776.1 See Comparison
AP026453.1 See Comparison
NZ_CP126782.1 See Comparison
CP082463.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP126787.1 See Comparison
CP054333.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison
NZ_OX359178.1 See Comparison
NZ_OX359186.1 See Comparison
NZ_CP103776.1 See Comparison
AP026453.1 See Comparison
AP026453.1 See Comparison
CP082463.1 See Comparison
NZ_CP126787.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP126782.1 See Comparison
NZ_OX359178.1 See Comparison
NZ_OX359186.1 See Comparison
NZ_CP103776.1 See Comparison
CP082463.1 See Comparison
NZ_OX359178.1 See Comparison
NZ_CP126782.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP126787.1 See Comparison
NZ_OX359186.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP103776.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP103776.1 See Comparison
AP026453.1 See Comparison
CP082463.1 See Comparison
NZ_CP126787.1 See Comparison
NZ_CP126782.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison
NZ_OX359178.1 See Comparison
NZ_OX359186.1 See Comparison
AP026453.1 See Comparison
CP082463.1 See Comparison
NZ_CP103776.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison
NZ_CP126787.1 See Comparison
NZ_CP126782.1 See Comparison
NZ_OX359178.1 See Comparison
NZ_OX359186.1 See Comparison
AP026453.1 See Comparison
CP082463.1 See Comparison
NZ_CP039601.1 See Comparison
NZ_CP126782.1 See Comparison
NZ_CP126787.1 See Comparison
NZ_CP128886.1 See Comparison
NZ_CP128985.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore