Plasmid CP052535.1

Sequence

Nucleotide Information

Accession CP052535.1
Description Klebsiella pneumoniae strain B16KP0157 plasmid pB16KP0157-2, complete sequence
Source insd
Topology circular
Length 152847 bp
GC Content 0.52 %
Created at NCBI May 4, 2020



Biosample

Curated Collection Information
Accession 14609870

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.66N;126.77E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.66/126.77
Address 삼희포시즌프라자, 38-15, Jungang-ro 1275beon-gil, 장항2동, Ilsandong-gu, Goyang-si, 10401, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP052535.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication proteincopy
PGAGS-(hydroxymethyl)glutathione synthasecopy
PGAGIS5 family transposasecopy
PGAGmrkAcopy
PGAGfimbria/pilus periplasmic chaperonecopy
PGAGmrkCcopy
PGAGmrkDcopy
PGAGmrkFcopy
PGAGEAL domain-containing proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 171 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP035180_00077MOBF140866141618plus92.43980372
relaxaseNC_021231_00058MOBF141630146888plus96.63410003311
mate-pair-formationNC_014312_00116MPF_F116122116424plus97.031004.49e-60204
mate-pair-formationNC_014312_00118MPF_F117000117737plus99.5931001.2499999999999998e-159496
mate-pair-formationNC_023332_00154MPF_F117740119161plus99.7891000791
mate-pair-formationNC_021231_00085MPF_F119788120354plus97.8841008.71e-91296
mate-pair-formationNC_021502_00131MPF_T122989125625plus96.35910001758
mate-pair-formationNC_014312_00128MPF_F126017126634plus98.058989.76e-121383
mate-pair-formationNC_022609_00081MPF_F126654127643plus95.7581000666
mate-pair-formationNC_019389_00080MPF_F127659128294plus97.171004.22e-136427
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2