Plasmid CP052293.1

Sequence

Nucleotide Information

Accession CP052293.1
Description Klebsiella pneumoniae strain E16KP0212 plasmid pE16KP0212-1, complete sequence
Source insd
Topology circular
Length 193678 bp
GC Content 0.52 %
Created at NCBI May 4, 2020



Assembly

Genome Data Information

Accession GCF_012965825.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14609931

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.87N;126.99E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.87/126.99
Address Yulgye-ri, Hwasun-gun, South Jeolla, 58165, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OX030689.1 See Comparison
NZ_CP098142.1 See Comparison
NZ_CP098137.1 See Comparison
NZ_CP098172.1 See Comparison
OW959915.1 See Comparison
OW969831.1 See Comparison
OW969769.1 See Comparison
OW968261.1 See Comparison
OW968235.1 See Comparison
OW968205.1 See Comparison
OW849336.1 See Comparison
OW849222.1 See Comparison
CP067722.1 See Comparison
NZ_CP083072.1 See Comparison
NZ_CP083037.1 See Comparison
NZ_KT896504.1 See Comparison
CP052276.1 See Comparison
NZ_OP378659.1 See Comparison
CP052298.1 See Comparison
CP052214.1 See Comparison
CP052307.1 See Comparison
OX030689.1 See Comparison
NZ_CP098142.1 See Comparison
NZ_CP098137.1 See Comparison
NZ_CP098172.1 See Comparison
OW968261.1 See Comparison
OW969831.1 See Comparison
OW969769.1 See Comparison
OW959915.1 See Comparison
OW968235.1 See Comparison
OW968205.1 See Comparison
OW849336.1 See Comparison
OW849222.1 See Comparison
NZ_CP083037.1 See Comparison
CP067722.1 See Comparison
NZ_KT896504.1 See Comparison
NZ_CP083072.1 See Comparison
CP052298.1 See Comparison
CP052214.1 See Comparison
CP052307.1 See Comparison
NZ_CP098142.1 See Comparison
CP052293.1 See Comparison
CP052276.1 See Comparison
NZ_OP378659.1 See Comparison
OX030689.1 See Comparison
NZ_CP098137.1 See Comparison
NZ_CP098172.1 See Comparison
OW969831.1 See Comparison
OW969769.1 See Comparison
OW959915.1 See Comparison
NZ_CP083072.1 See Comparison
OW968205.1 See Comparison
OW849222.1 See Comparison
CP067722.1 See Comparison
OW968261.1 See Comparison
OW968235.1 See Comparison
OW849336.1 See Comparison
NZ_CP083037.1 See Comparison
OW849222.1 See Comparison
CP052276.1 See Comparison
OW959915.1 See Comparison
OW969769.1 See Comparison
OW849336.1 See Comparison
NZ_KT896504.1 See Comparison
CP052298.1 See Comparison
CP052214.1 See Comparison
CP052307.1 See Comparison
NZ_OP378659.1 See Comparison
OX030689.1 See Comparison
NZ_CP098142.1 See Comparison
NZ_CP098137.1 See Comparison
NZ_CP098172.1 See Comparison
OW969831.1 See Comparison
OW968261.1 See Comparison
OW968235.1 See Comparison
OW968205.1 See Comparison
CP052298.1 See Comparison
NZ_CP083072.1 See Comparison
NZ_CP083037.1 See Comparison
CP067722.1 See Comparison
NZ_KT896504.1 See Comparison
CP052214.1 See Comparison
CP052307.1 See Comparison
NZ_CP098142.1 See Comparison
CP052276.1 See Comparison
NZ_OP378659.1 See Comparison
OX030689.1 See Comparison
NZ_CP098137.1 See Comparison
NZ_CP098172.1 See Comparison
OW969831.1 See Comparison
OW968261.1 See Comparison
OW849336.1 See Comparison
OW959915.1 See Comparison
OW968235.1 See Comparison
OW968205.1 See Comparison
OW849222.1 See Comparison
OW969769.1 See Comparison
NZ_CP083072.1 See Comparison
CP067722.1 See Comparison
NZ_CP083037.1 See Comparison
CP052276.1 See Comparison
NZ_KT896504.1 See Comparison
CP052298.1 See Comparison
CP052214.1 See Comparison
CP052307.1 See Comparison
OX030689.1 See Comparison
NZ_OP378659.1 See Comparison
OW968235.1 See Comparison
NZ_CP098142.1 See Comparison
NZ_CP098137.1 See Comparison
OW959915.1 See Comparison
NZ_CP098172.1 See Comparison
OW969831.1 See Comparison
OW969769.1 See Comparison
OW968205.1 See Comparison
OW968261.1 See Comparison
OW849336.1 See Comparison
NZ_CP083072.1 See Comparison
OW849222.1 See Comparison
CP067722.1 See Comparison
NZ_CP083037.1 See Comparison
CP052307.1 See Comparison
NZ_KT896504.1 See Comparison
CP052298.1 See Comparison
CP052214.1 See Comparison
NZ_OP378659.1 See Comparison
CP052276.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: CP052276.1
    • Description: Klebsiella pneumoniae strain E16KP0241 plasmid pE16KP0241-1, complete sequence
    • Source: insd
    • Created at NCBI: May 4, 2020

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 14609935
  • GEOGRAPHICAL INFORMATION
    • Original Query: 34.87N;126.99E
    • Original Query Type: coordinates
    • Address: Yulgye-ri, Hwasun-gun, South Jeolla, 58165, South Korea
    • Coordinates (Lat/Lon): 34.87/126.99
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bloodstream infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore