Plasmid CP051780.1

Sequence

Nucleotide Information

Accession CP051780.1
Description Escherichia coli O157:H7 strain FLT_2019B plasmid pFLT_2019B-3, complete sequence
Source insd
Topology circular
Length 38454 bp
GC Content 0.41 %
Created at NCBI Feb. 8, 2021



Assembly

Genome Data Information

Accession GCA_016834675.1
Assembly Coverage 196


Biosample

Curated Collection Information
Accession 14648872

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query 40.524829N;98.140806W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.52/-98.14
Address Roman L. Hruska U.S. Meat Animal Research Center, 844, Road 313, Clay Center, Clay County, Nebraska, 68933, United States

ECOSYSTEM
Original Query cattle,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore