Plasmid CP049533.1

Sequence

Nucleotide Information

Accession CP049533.1
Description Staphylococcus aureus strain pt205 plasmid pER05509.3A.2, complete sequence
Source insd
Topology circular
Length 13159 bp
GC Content 0.28 %
Created at NCBI Sept. 24, 2020



Assembly

Genome Data Information

Accession GCA_014727455.1
Assembly Coverage 291.221


Biosample

Curated Collection Information
Accession 12331022

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP049533.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluscadDcopy
rgiPC1 beta-lactamase (blaZ)copy
amrfinderplusblaZcopy
PGAGMarR family transcriptional regulatorcopy
PGAGoxidoreductasecopy
PGAGtype I toxin-antitoxin system Fst family toxincopy
PGAGhelix-turn-helix transcriptional regulatorcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGrecombinase family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 14 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000261__GQ900456rep_cluster_101787108886minus92.697941.04e-65255
oriTAF001314MOBQ85048652minus1001005.980000000000001e-72276
repliconAP003139rep_cluster_2100901710001minus99.39110001784
repliconCP000737rep_cluster_17331042711169plus99.06310001334
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2