Plasmid CP049516.1

Sequence

Nucleotide Information

Accession CP049516.1
Description Staphylococcus aureus strain pt215 plasmid pER05718.3A.3, complete sequence
Source insd
Topology circular
Length 13163 bp
GC Content 0.28 %
Created at NCBI Sept. 24, 2020



Assembly

Genome Data Information

Accession GCA_014727295.1
Assembly Coverage 479.743


Biosample

Curated Collection Information
Accession 12331032

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP051993.1 See Comparison
CP051908.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
CP049549.1 See Comparison
CP049457.1 See Comparison
CP049428.1 See Comparison
CP030576.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
NZ_CP131650.1 See Comparison
CP154285.1 See Comparison
NZ_CP151136.1 See Comparison
NZ_CP150658.1 See Comparison
CP151579.1 See Comparison
CP051908.1 See Comparison
CP051993.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
CP049549.1 See Comparison
CP030576.1 See Comparison
CP049457.1 See Comparison
CP049428.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
NZ_CP131650.1 See Comparison
CP154285.1 See Comparison
NZ_CP150658.1 See Comparison
CP151579.1 See Comparison
NZ_CP151136.1 See Comparison
CP030576.1 See Comparison
CP051908.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
CP049549.1 See Comparison
CP051993.1 See Comparison
CP049457.1 See Comparison
CP049428.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
CP154285.1 See Comparison
CP151579.1 See Comparison
NZ_CP131650.1 See Comparison
NZ_CP151136.1 See Comparison
CP051993.1 See Comparison
NZ_CP150658.1 See Comparison
CP051908.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
NZ_CP131650.1 See Comparison
CP049549.1 See Comparison
CP030576.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
CP049457.1 See Comparison
CP049428.1 See Comparison
CP154285.1 See Comparison
NZ_CP150658.1 See Comparison
NZ_CP151136.1 See Comparison
CP151579.1 See Comparison
CP051993.1 See Comparison
CP049457.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
CP051908.1 See Comparison
CP049549.1 See Comparison
CP049428.1 See Comparison
CP151579.1 See Comparison
CP030576.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
NZ_CP131650.1 See Comparison
NZ_CP151136.1 See Comparison
CP154285.1 See Comparison
CP049428.1 See Comparison
NZ_CP150658.1 See Comparison
CP051894.1 See Comparison
CP049562.1 See Comparison
CP049549.1 See Comparison
CP051993.1 See Comparison
CP051908.1 See Comparison
CP030576.1 See Comparison
CP030517.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
CP049457.1 See Comparison
CP151579.1 See Comparison
NZ_CP131650.1 See Comparison
CP154285.1 See Comparison
NZ_CP151136.1 See Comparison
CP051993.1 See Comparison
NZ_CP150658.1 See Comparison
CP051908.1 See Comparison
CP049562.1 See Comparison
CP049549.1 See Comparison
CP049516.1 See Comparison
CP051894.1 See Comparison
CP049428.1 See Comparison
NZ_CP131650.1 See Comparison
CP030576.1 See Comparison
CP030517.1 See Comparison
CP154285.1 See Comparison
CP049457.1 See Comparison
CP030519.1 See Comparison
CP030521.1 See Comparison
CP030535.1 See Comparison
NZ_CP150658.1 See Comparison
CP151579.1 See Comparison
NZ_CP151136.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2