Plasmid CP048414.1

Sequence

Nucleotide Information

Accession	CP048414.1
Description	Klebsiella pneumoniae strain MH9CRKP plasmid pKPC_MH9CRKP, complete sequence
Source	insd
Topology	circular
Length	92433 bp
GC Content	0.54 %
Created at NCBI	Aug. 7, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Biosample

Curated Collection Information

Accession	13975213

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	37.09N;121.00E
Original Query Type	coordinates
Coordinates (Lat/Lon)	37.09/121.00
Address	Xujiadian, Haiyang City, Yantai, Shandong, 265100, China

ECOSYSTEM

Original Query	Equus caballus
Classification	host_associated
Host-associated Taxon	Equus caballus (9796)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

CP048413.1

Similar Plasmids

based on Mash distance

CP048414.1	See Comparison

Plasmid Visualization

Grays

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Purples

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Greens

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Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	rmtB1		copy
amrfinderplus	merC		copy
amrfinderplus	blaKPC-2		copy
amrfinderplus	blaCTX-M		copy
amrfinderplus	fosA3		copy
amrfinderplus	blaTEM-1		copy
rgi	rmtB		copy
rgi	CTX-M-65		copy
amrfinderplus	merT		copy
PGAG	DNA methylase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 109 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	MH263653_00001	IncFIA	51004	51759	minus	100	100	0	1397
replicon	JN232517	IncFII	51859	52118	plus	100	100	2.26e-133	481
replicon	000210__KF623109_00045	IncU	72631	73191	plus	100	100	0	1037
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2