Plasmid CP047612.1

Sequence

Nucleotide Information

Accession CP047612.1
Description Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_3, complete sequence
Source insd
Topology circular
Length 32448 bp
GC Content 0.41 %
Created at NCBI June 5, 2020



Assembly

Genome Data Information

Accession GCF_013282195.1
Assembly Coverage 85


Biosample

Curated Collection Information
Accession 13545722

PLASMID INFORMATION
Genotype ST2373
BIOSAMPLE_pathotype UPEC

GEOGRAPHICAL INFORMATION
Original Query 59.667N;10.769E
Original Query Type coordinates
Coordinates (Lat/Lon) 59.67/10.77
Address Universitetstunet, Pentagon, Ås, Viken, 1433, Norway

ECOSYSTEM
Original Query surface water
Classification aquatic
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore