Plasmid CP044025.1

Sequence

Nucleotide Information

Accession	CP044025.1
Description	Escherichia coli strain 2492 plasmid p2492-4-MCR-1, complete sequence
Source	insd
Topology	circular
Length	60688 bp
GC Content	0.42 %
Created at NCBI	Nov. 5, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCA_015244435.1
Assembly Coverage	64

Biosample

Curated Collection Information

Accession	12097412

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	37.88N;122.30W
Original Query Type	coordinates
Coordinates (Lat/Lon)	37.88/-122.30
Address	901, Gilman Street, Ocean View, Berkeley, Alameda County, California, 94710, United States

ECOSYSTEM

Original Query	pork
Classification	host_associated
Host-associated Taxon	Sus scrofa (9823)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

AP027410.1	See Comparison
NZ_OP434482.1	See Comparison
LC712384.1	See Comparison
LC712329.1	See Comparison
LC709173.1	See Comparison
NZ_CP047014.1	See Comparison
NZ_CP032081.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_AP027636.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_KU934208.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_KY363995.1	See Comparison
AP027410.1	See Comparison
NZ_CP051226.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_MT929283.1	See Comparison
NZ_MN746291.1	See Comparison
CP044025.1	See Comparison
NZ_AP027636.1	See Comparison
LC709173.1	See Comparison
NZ_CP047014.1	See Comparison
NZ_CP032081.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_OP434482.1	See Comparison
LC712384.1	See Comparison
LC712329.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_KU934208.1	See Comparison
AP027410.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_MT929283.1	See Comparison
NZ_MN746291.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_KY363995.1	See Comparison
NZ_CP051226.1	See Comparison
LC712384.1	See Comparison
NZ_OP434482.1	See Comparison
LC712329.1	See Comparison
LC709173.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_CP047014.1	See Comparison
NZ_CP032081.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_AP027636.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_KU934208.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_KY363995.1	See Comparison
NZ_CP051226.1	See Comparison
NZ_MN746291.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_MT929283.1	See Comparison
NZ_OP434482.1	See Comparison
AP027410.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_CP047014.1	See Comparison
NZ_CP032081.1	See Comparison
LC712384.1	See Comparison
LC712329.1	See Comparison
LC709173.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_AP027636.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_KU934208.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_KY363995.1	See Comparison
NZ_CP051226.1	See Comparison
NZ_MN746291.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_MT929283.1	See Comparison
NZ_OP434482.1	See Comparison
AP027410.1	See Comparison
NZ_CP047014.1	See Comparison
LC712384.1	See Comparison
LC712329.1	See Comparison
LC709173.1	See Comparison
NZ_CP032081.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_AP027636.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_KU934208.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_CP051226.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_KY363995.1	See Comparison
NZ_MT929283.1	See Comparison
LC712384.1	See Comparison
NZ_MN746291.1	See Comparison
NZ_OP434482.1	See Comparison
AP027410.1	See Comparison
LC712329.1	See Comparison
LC709173.1	See Comparison
NZ_CP047014.1	See Comparison
NZ_CP032081.1	See Comparison
NZ_AP018806.1	See Comparison
NZ_CP129275.1	See Comparison
NZ_AP027636.1	See Comparison
NZ_AP027443.1	See Comparison
NZ_CP126510.1	See Comparison
NZ_AP027497.1	See Comparison
NZ_KX856067.1	See Comparison
NZ_MN232209.1	See Comparison
NZ_MN232187.1	See Comparison
NZ_MG594799.1	See Comparison
NZ_LC473131.1	See Comparison
NZ_LC469775.1	See Comparison
NZ_AP018412.1	See Comparison
NZ_MH271383.1	See Comparison
NZ_MG598815.1	See Comparison
NZ_MH522416.1	See Comparison
NZ_MH522415.1	See Comparison
NZ_KY471309.1	See Comparison
NZ_KY795977.1	See Comparison
NZ_KY363994.1	See Comparison
NZ_KU934208.1	See Comparison
NZ_KY120366.1	See Comparison
NZ_KY363995.1	See Comparison
NZ_KY363998.1	See Comparison
NZ_CP051226.1	See Comparison
NZ_MT929290.1	See Comparison
NZ_MT929283.1	See Comparison
NZ_MN746291.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore