Plasmid CP041128.1

Sequence

Nucleotide Information

Accession CP041128.1
Description Serratia marcescens strain WVU-005 plasmid pWVU-005-2, complete sequence
Source insd
Topology circular
Length 63265 bp
GC Content 0.56 %
Created at NCBI July 8, 2019



Assembly

Genome Data Information

Accession GCF_006711145.1
Assembly Coverage 1000


Biosample

Curated Collection Information
Accession 11894223

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 38.03N;78.50W
Original Query Type coordinates
Coordinates (Lat/Lon) 38.03/-78.50
Address 329, Crispell Drive, Jefferson Park Avenue, Charlottesville, Virginia, 22903, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query opportunistic bacterial infectious disease
DOID/SYMP
  • Opportunistic bacterial infectious disease (DOID:0050340 )
    • A bacterial infectious disease that results_in infection by bacteria in individuals whose host defense mechanisms have been compromised.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP041128.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore