Plasmid CP038509.1

Sequence

Nucleotide Information

Accession CP038509.1
Description Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219b
Source insd
Topology linear
Length 41193 bp
GC Content 0.35 %
Created at NCBI June 24, 2019



Assembly

Genome Data Information

Accession GCF_006402875.1
Assembly Coverage 105


Biosample

Curated Collection Information
Accession 11252736

PLASMID INFORMATION
Genotype ST-32

GEOGRAPHICAL INFORMATION
Original Query 14.06S;75.73W
Original Query Type coordinates
Coordinates (Lat/Lon) -14.06/-75.73
Address I.E. Nº 132, Calle Callao, Urbanización María Auxiliadora, Ica, Province of Ica, Ica, 11001, Peru

ECOSYSTEM
Original Query liver and spleen of chicken (broiler)
Classification host_associated,liver,spleen
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP038509.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore