Plasmid CP038003.1

Sequence

Nucleotide Information

Accession CP038003.1
Description Klebsiella pneumoniae strain SCKP020009 plasmid pKPC2_020009, complete sequence
Source insd
Topology circular
Length 149518 bp
GC Content 0.54 %
Created at NCBI March 15, 2019



Biosample

Curated Collection Information
Accession 8624603

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Bazhong,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 31.86/106.75
Address China,Bazhong,Sichuan

ECOSYSTEM
Original Query Homo sapiens,Pure Culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097662.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
NZ_CP066529.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_CP097662.1 See Comparison
NZ_CP097662.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066529.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
NZ_CP097662.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066529.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
NZ_CP066529.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_CP097662.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_CP058228.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
NZ_CP097662.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066529.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_CP036306.1 See Comparison
NZ_MT269844.1 See Comparison
NZ_MT269838.1 See Comparison
NZ_MT269820.1 See Comparison
NZ_MT269834.1 See Comparison
CP038003.1 See Comparison
NZ_CP030301.1 See Comparison
NZ_CP066518.1 See Comparison
NZ_MF168406.1 See Comparison
NZ_CP066529.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore