Plasmid CP034254.1

Sequence

Nucleotide Information

Accession CP034254.1
Description Escherichia coli strain IVRI Kol CP4 plasmid p1ESCUMpO83_CORR
Source insd
Topology linear
Length 92840 bp
GC Content 0.52 %
Created at NCBI March 2, 2020



Assembly

Genome Data Information

Accession GCF_011045455.1
Assembly Coverage 61.26


Biosample

Curated Collection Information
Accession 10246264

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.5726N;88.3639E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.57/88.36
Address Chatterjee Lane, Tiretta Bazaar, Bowbazar, Kolkata, Kolkata District, West Bengal, 700073, India

ECOSYSTEM
Original Query Mastitis Milk
Classification drink,food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MN641485.1 See Comparison
LC744447.1 See Comparison
LC744439.1 See Comparison
CP142555.1 See Comparison
LC744447.1 See Comparison
LC744439.1 See Comparison
NZ_MT621569.1 See Comparison
NZ_OQ230786.1 See Comparison
CP142555.1 See Comparison
NZ_MF353156.1 See Comparison
NZ_MH213345.1 See Comparison
CP034254.1 See Comparison
NZ_MN641485.1 See Comparison
NZ_MT621569.1 See Comparison
NZ_OQ230786.1 See Comparison
LC744447.1 See Comparison
NZ_MF353156.1 See Comparison
NZ_MH213345.1 See Comparison
NZ_MN641485.1 See Comparison
LC744439.1 See Comparison
NZ_MH213345.1 See Comparison
NZ_MT621569.1 See Comparison
NZ_OQ230786.1 See Comparison
CP142555.1 See Comparison
NZ_MF353156.1 See Comparison
NZ_OQ230786.1 See Comparison
LC744447.1 See Comparison
LC744439.1 See Comparison
NZ_MT621569.1 See Comparison
NZ_MN641485.1 See Comparison
NZ_MT621569.1 See Comparison
CP142555.1 See Comparison
NZ_MH213345.1 See Comparison
NZ_MN641485.1 See Comparison
NZ_MF353156.1 See Comparison
LC744447.1 See Comparison
LC744439.1 See Comparison
NZ_OQ230786.1 See Comparison
NZ_MN641485.1 See Comparison
CP142555.1 See Comparison
NZ_MF353156.1 See Comparison
NZ_MH213345.1 See Comparison
LC744447.1 See Comparison
LC744439.1 See Comparison
CP142555.1 See Comparison
NZ_OQ230786.1 See Comparison
NZ_MT621569.1 See Comparison
LC744447.1 See Comparison
NZ_MF353156.1 See Comparison
NZ_MH213345.1 See Comparison
NZ_MN641485.1 See Comparison
LC744439.1 See Comparison
CP142555.1 See Comparison
NZ_MT621569.1 See Comparison
NZ_OQ230786.1 See Comparison
NZ_MH213345.1 See Comparison
NZ_MF353156.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2