Plasmid CP034201.2

Sequence

Nucleotide Information

Accession CP034201.2
Description Klebsiella pneumoniae subsp. pneumoniae strain KpvST383_NDM_OXA-48 plasmid pKpvST383L, complete sequence
Source insd
Topology circular
Length 372826 bp
GC Content 0.47 %
Created at NCBI Dec. 4, 2018



Assembly

Genome Data Information

Accession GCF_003860645.1
Assembly Coverage 280


Biosample

Curated Collection Information
Accession 10409888

PLASMID INFORMATION
Genotype ST383

GEOGRAPHICAL INFORMATION
Original Query 51.48N;0.22W
Original Query Type coordinates
Coordinates (Lat/Lon) 51.48/-0.22
Address Queensmill Road, West Kensington, London Borough of Hammersmith and Fulham, London, Greater London, England, SW6 6JP, United Kingdom

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 60
Host-associated Sex female

DISEASE
Original Query sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusarmAcopy
amrfinderplusblaCTX-M-15copy
amrfinderplusaadA1copy
amrfinderplusaac(6')-Ibcopy
amrfinderplusaph(3')-VIcopy
amrfinderplusaph(3')-Iacopy
amrfinderplusdfrA5copy
amrfinderplusblaTEM-1copy
amrfinderplusblaNDM-5copy
amrfinderplusblecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 363 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_016980_00239MOBH104083107013minus87.88210001701
mate-pair-formationNC_016980_00240MPF_F101967104090minus99.71810001477
mate-pair-formationNC_018107_00101MPF_F112265113704plus96.4581000925
mate-pair-formationNC_016980_00110MPF_F323574324608minus1001000719
mate-pair-formationNC_016980_00109MPF_F324608325966minus99.7791000937
mate-pair-formationNC_016980_00099MPF_T335445338159minus99.66910001840
mate-pair-formationNC_018107_00235MPF_F342120343286minus93.3161000709
mate-pair-formationNC_023911_00309MPF_F343291343959minus87.8921005.66e-123393
repliconCP024497_00001IncFIB2153122593plus92.8579801543
replicon000562__KT346360_00001rep_cluster_1254268115268869plus90.464810996
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2