Plasmid CP030581.1

Sequence

Nucleotide Information

Accession CP030581.1
Description Staphylococcus aureus strain ER04397.3 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 43567 bp
GC Content 0.29 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008936455.1
Assembly Coverage 344.083


Biosample

Curated Collection Information
Accession 9484064

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP052023.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP052005.1 See Comparison
CP052000.1 See Comparison
CP051979.1 See Comparison
CP051966.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP051923.1 See Comparison
CP051904.1 See Comparison
CP051899.1 See Comparison
CP051892.1 See Comparison
CP049543.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP049531.1 See Comparison
CP049521.1 See Comparison
CP049520.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049497.1 See Comparison
CP049471.1 See Comparison
CP049447.1 See Comparison
CP049419.1 See Comparison
CP049414.1 See Comparison
CP049392.1 See Comparison
CP049370.1 See Comparison
CP030705.1 See Comparison
CP030636.1 See Comparison
CP030639.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030612.1 See Comparison
CP030618.1 See Comparison
CP030600.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP030554.1 See Comparison
CP030573.1 See Comparison
CP030448.1 See Comparison
CP030538.1 See Comparison
CP030502.1 See Comparison
CP030507.1 See Comparison
CP030435.1 See Comparison
CP030420.1 See Comparison
CP030429.1 See Comparison
CP030491.1 See Comparison
CP030400.1 See Comparison
CP030453.1 See Comparison
CP030468.1 See Comparison
CP030382.1 See Comparison
CP030456.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP049543.1 See Comparison
CP051979.1 See Comparison
CP051966.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP049531.1 See Comparison
CP049521.1 See Comparison
CP051923.1 See Comparison
CP052023.1 See Comparison
CP049520.1 See Comparison
CP049506.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP051904.1 See Comparison
CP049502.1 See Comparison
CP051899.1 See Comparison
CP049497.1 See Comparison
CP051892.1 See Comparison
CP052005.1 See Comparison
CP049471.1 See Comparison
CP052000.1 See Comparison
CP049419.1 See Comparison
CP049414.1 See Comparison
CP049447.1 See Comparison
CP030636.1 See Comparison
CP049392.1 See Comparison
CP049370.1 See Comparison
CP030639.1 See Comparison
CP030554.1 See Comparison
CP030685.1 See Comparison
CP030573.1 See Comparison
CP030538.1 See Comparison
CP030609.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030612.1 See Comparison
CP030651.1 See Comparison
CP030618.1 See Comparison
CP030502.1 See Comparison
CP030600.1 See Comparison
CP030507.1 See Comparison
CP030491.1 See Comparison
CP030453.1 See Comparison
CP030705.1 See Comparison
CP030420.1 See Comparison
CP030429.1 See Comparison
CP052023.1 See Comparison
CP030400.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP051979.1 See Comparison
CP051966.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP051923.1 See Comparison
CP051904.1 See Comparison
CP030468.1 See Comparison
CP030456.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP049531.1 See Comparison
CP052020.1 See Comparison
CP049521.1 See Comparison
CP049520.1 See Comparison
CP051899.1 See Comparison
CP052017.1 See Comparison
CP052005.1 See Comparison
CP051892.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049497.1 See Comparison
CP052000.1 See Comparison
CP049414.1 See Comparison
CP049543.1 See Comparison
CP049392.1 See Comparison
CP049471.1 See Comparison
CP049447.1 See Comparison
CP049370.1 See Comparison
CP049419.1 See Comparison
CP030636.1 See Comparison
CP030639.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030612.1 See Comparison
CP030618.1 See Comparison
CP030600.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP051966.1 See Comparison
CP030705.1 See Comparison
CP030429.1 See Comparison
CP030400.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP030554.1 See Comparison
CP030573.1 See Comparison
CP030538.1 See Comparison
CP030502.1 See Comparison
CP030507.1 See Comparison
CP030491.1 See Comparison
CP030453.1 See Comparison
CP030468.1 See Comparison
CP030456.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP030420.1 See Comparison
CP049531.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP049521.1 See Comparison
CP049520.1 See Comparison
CP051923.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049497.1 See Comparison
CP049471.1 See Comparison
CP052023.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP052005.1 See Comparison
CP051904.1 See Comparison
CP052000.1 See Comparison
CP051979.1 See Comparison
CP049447.1 See Comparison
CP051899.1 See Comparison
CP051892.1 See Comparison
CP049543.1 See Comparison
CP049419.1 See Comparison
CP049414.1 See Comparison
CP049392.1 See Comparison
CP049370.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP030639.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030573.1 See Comparison
CP030538.1 See Comparison
CP030612.1 See Comparison
CP030618.1 See Comparison
CP030600.1 See Comparison
CP030502.1 See Comparison
CP030507.1 See Comparison
CP030491.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP030705.1 See Comparison
CP030554.1 See Comparison
CP030636.1 See Comparison
CP030400.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP030453.1 See Comparison
CP030468.1 See Comparison
CP030456.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP030420.1 See Comparison
CP052023.1 See Comparison
CP030429.1 See Comparison
CP049521.1 See Comparison
CP049520.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049497.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP051923.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP051904.1 See Comparison
CP052005.1 See Comparison
CP051899.1 See Comparison
CP051892.1 See Comparison
CP049471.1 See Comparison
CP052000.1 See Comparison
CP049447.1 See Comparison
CP051979.1 See Comparison
CP049543.1 See Comparison
CP051966.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP049531.1 See Comparison
CP049419.1 See Comparison
CP049392.1 See Comparison
CP049414.1 See Comparison
CP049370.1 See Comparison
CP030631.1 See Comparison
CP030502.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030612.1 See Comparison
CP030618.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP030705.1 See Comparison
CP030600.1 See Comparison
CP030507.1 See Comparison
CP030491.1 See Comparison
CP030636.1 See Comparison
CP030453.1 See Comparison
CP030639.1 See Comparison
CP030468.1 See Comparison
CP030456.1 See Comparison
CP030400.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP030554.1 See Comparison
CP030407.1 See Comparison
CP030573.1 See Comparison
CP030420.1 See Comparison
CP049471.1 See Comparison
CP030429.1 See Comparison
CP052023.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP052005.1 See Comparison
CP052000.1 See Comparison
CP051979.1 See Comparison
CP051966.1 See Comparison
CP051960.1 See Comparison
CP030538.1 See Comparison
CP051923.1 See Comparison
CP051904.1 See Comparison
CP051899.1 See Comparison
CP051892.1 See Comparison
CP049447.1 See Comparison
CP051955.1 See Comparison
CP049419.1 See Comparison
CP049370.1 See Comparison
CP049543.1 See Comparison
CP049538.1 See Comparison
CP049536.1 See Comparison
CP049531.1 See Comparison
CP049414.1 See Comparison
CP049521.1 See Comparison
CP049392.1 See Comparison
CP049520.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049497.1 See Comparison
CP030600.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP030705.1 See Comparison
CP030581.1 See Comparison
CP030636.1 See Comparison
CP030639.1 See Comparison
CP030491.1 See Comparison
CP030554.1 See Comparison
CP030453.1 See Comparison
CP030468.1 See Comparison
CP030456.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030612.1 See Comparison
CP030618.1 See Comparison
CP030573.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP030538.1 See Comparison
CP030502.1 See Comparison
CP030420.1 See Comparison
CP030429.1 See Comparison
CP030507.1 See Comparison
CP051899.1 See Comparison
CP030400.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP052023.1 See Comparison
CP052020.1 See Comparison
CP052017.1 See Comparison
CP052005.1 See Comparison
CP052000.1 See Comparison
CP051979.1 See Comparison
CP051966.1 See Comparison
CP051960.1 See Comparison
CP051955.1 See Comparison
CP051892.1 See Comparison
CP051923.1 See Comparison
CP049543.1 See Comparison
CP051904.1 See Comparison
CP049447.1 See Comparison
CP049538.1 See Comparison
CP049419.1 See Comparison
CP049536.1 See Comparison
CP049414.1 See Comparison
CP049531.1 See Comparison
CP049521.1 See Comparison
CP049392.1 See Comparison
CP049520.1 See Comparison
CP049506.1 See Comparison
CP049502.1 See Comparison
CP049370.1 See Comparison
CP049497.1 See Comparison
CP049471.1 See Comparison
CP030453.1 See Comparison
CP030631.1 See Comparison
CP030648.1 See Comparison
CP030651.1 See Comparison
CP030705.1 See Comparison
CP030636.1 See Comparison
CP030639.1 See Comparison
CP030685.1 See Comparison
CP030609.1 See Comparison
CP030612.1 See Comparison
CP030468.1 See Comparison
CP030618.1 See Comparison
CP030456.1 See Comparison
CP030448.1 See Comparison
CP030435.1 See Comparison
CP030420.1 See Comparison
CP030554.1 See Comparison
CP030429.1 See Comparison
CP030573.1 See Comparison
CP030538.1 See Comparison
CP030600.1 See Comparison
CP030400.1 See Comparison
CP030502.1 See Comparison
CP030382.1 See Comparison
CP030388.1 See Comparison
CP030407.1 See Comparison
CP030507.1 See Comparison
CP030491.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: CP030420.1
    • Description: Staphylococcus aureus strain ER04115.3 plasmid unnamed1, complete sequence
    • Source: insd
    • Created at NCBI: Oct. 10, 2019

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 9484043
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.7903114N;73.9528738W
    • Original Query Type: coordinates
    • Address: Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: CP030400.1
    • Description: Staphylococcus aureus strain ER02637.3 plasmid unnamed1, complete sequence
    • Source: insd
    • Created at NCBI: Oct. 10, 2019

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 9483984
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.7903114N;73.9528738W
    • Original Query Type: coordinates
    • Address: Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: CP030631.1
    • Description: Staphylococcus aureus strain ER03544.3 plasmid unnamed1, complete sequence
    • Source: insd
    • Created at NCBI: Oct. 10, 2019

  • Host Taxonomy
    Assigned Host: Staphylococcus aureus (1280)
  • Biosample
    Accession: 9484010
  • GEOGRAPHICAL INFORMATION
    • Original Query: 40.7903114N;73.9528738W
    • Original Query Type: coordinates
    • Address: Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States
    • Coordinates (Lat/Lon): 40.79/-73.95
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON











Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2