Plasmid CP030571.1

Sequence

Nucleotide Information

Accession CP030571.1
Description Staphylococcus aureus strain ER01892.3 plasmid unnamed2, complete sequence
Source insd
Topology circular
Length 25430 bp
GC Content 0.31 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008935155.1
Assembly Coverage 134.407


Biosample

Curated Collection Information

Accession 9483967

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
  • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP053637.1 See Comparison
CP053635.1 See Comparison
CP049509.1 See Comparison
CP052021.1 See Comparison
CP052019.1 See Comparison
CP052016.1 See Comparison
CP052003.1 See Comparison
CP052002.1 See Comparison
CP051995.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP052030.1 See Comparison
CP051953.1 See Comparison
CP051941.1 See Comparison
CP051925.1 See Comparison
CP051924.1 See Comparison
CP051916.1 See Comparison
CP051913.1 See Comparison
CP051905.1 See Comparison
CP051897.1 See Comparison
CP051891.1 See Comparison
CP049582.1 See Comparison
CP049571.1 See Comparison
CP049539.1 See Comparison
CP049537.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP049519.1 See Comparison
CP049505.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049495.1 See Comparison
CP049481.1 See Comparison
CP049473.1 See Comparison
CP049462.1 See Comparison
CP049449.1 See Comparison
CP049418.1 See Comparison
CP049412.1 See Comparison
CP049393.1 See Comparison
CP049387.1 See Comparison
CP049375.1 See Comparison
CP049372.1 See Comparison
CP030503.1 See Comparison
CP030613.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030508.1 See Comparison
CP030593.1 See Comparison
CP030509.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030492.1 See Comparison
CP030640.1 See Comparison
CP030442.1 See Comparison
CP030686.1 See Comparison
CP030602.1 See Comparison
CP030454.1 See Comparison
CP030466.1 See Comparison
CP030582.1 See Comparison
CP030610.1 See Comparison
CP030387.1 See Comparison
CP030469.1 See Comparison
CP030408.1 See Comparison
CP030457.1 See Comparison
CP030463.1 See Comparison
CP030565.1 See Comparison
CP030449.1 See Comparison
CP030698.1 See Comparison
CP030433.1 See Comparison
CP030421.1 See Comparison
CP030555.1 See Comparison
CP030430.1 See Comparison
CP030567.1 See Comparison
CP030574.1 See Comparison
CP030401.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030383.1 See Comparison
NZ_CP151122.1 See Comparison
NZ_CP115475.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
CP053635.1 See Comparison
CP052021.1 See Comparison
NZ_CP053637.1 See Comparison
CP052019.1 See Comparison
CP051925.1 See Comparison
CP051924.1 See Comparison
CP052016.1 See Comparison
CP051916.1 See Comparison
CP052003.1 See Comparison
CP051913.1 See Comparison
CP051905.1 See Comparison
CP049509.1 See Comparison
CP052002.1 See Comparison
CP051995.1 See Comparison
CP051897.1 See Comparison
CP051891.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP049582.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP049571.1 See Comparison
CP049498.1 See Comparison
CP052030.1 See Comparison
CP049495.1 See Comparison
CP051953.1 See Comparison
CP051941.1 See Comparison
CP049481.1 See Comparison
CP049539.1 See Comparison
CP049537.1 See Comparison
CP049375.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP049473.1 See Comparison
CP049372.1 See Comparison
CP049519.1 See Comparison
CP030508.1 See Comparison
CP049505.1 See Comparison
CP049500.1 See Comparison
CP049462.1 See Comparison
CP049449.1 See Comparison
CP049418.1 See Comparison
CP049412.1 See Comparison
CP049393.1 See Comparison
CP049387.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030593.1 See Comparison
CP030509.1 See Comparison
CP030492.1 See Comparison
CP030442.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030602.1 See Comparison
CP030454.1 See Comparison
CP030640.1 See Comparison
CP030466.1 See Comparison
CP030686.1 See Comparison
CP030582.1 See Comparison
CP030469.1 See Comparison
CP030457.1 See Comparison
CP030610.1 See Comparison
CP030463.1 See Comparison
CP030613.1 See Comparison
CP030565.1 See Comparison
CP030449.1 See Comparison
CP030698.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030433.1 See Comparison
CP030421.1 See Comparison
CP030555.1 See Comparison
CP030430.1 See Comparison
CP030567.1 See Comparison
CP030574.1 See Comparison
CP030401.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030503.1 See Comparison
CP030383.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
CP053635.1 See Comparison
NZ_CP151122.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
NZ_CP115475.1 See Comparison
CP049509.1 See Comparison
CP052021.1 See Comparison
CP052019.1 See Comparison
CP052016.1 See Comparison
CP052003.1 See Comparison
CP052002.1 See Comparison
NZ_CP053637.1 See Comparison
CP049481.1 See Comparison
CP051925.1 See Comparison
CP051924.1 See Comparison
CP051916.1 See Comparison
CP051913.1 See Comparison
CP051905.1 See Comparison
CP051995.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP052030.1 See Comparison
CP051953.1 See Comparison
CP051941.1 See Comparison
CP049473.1 See Comparison
CP051897.1 See Comparison
CP051891.1 See Comparison
CP049462.1 See Comparison
CP049582.1 See Comparison
CP049372.1 See Comparison
CP049449.1 See Comparison
CP049571.1 See Comparison
CP049418.1 See Comparison
CP049539.1 See Comparison
CP049537.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP049519.1 See Comparison
CP049412.1 See Comparison
CP049505.1 See Comparison
CP049393.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049495.1 See Comparison
CP049387.1 See Comparison
CP049375.1 See Comparison
CP030602.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030593.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030640.1 See Comparison
CP030509.1 See Comparison
CP030582.1 See Comparison
CP030492.1 See Comparison
CP030442.1 See Comparison
CP030686.1 See Comparison
CP030610.1 See Comparison
CP030613.1 See Comparison
CP030565.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030454.1 See Comparison
CP030466.1 See Comparison
CP030469.1 See Comparison
CP030698.1 See Comparison
CP030457.1 See Comparison
CP030555.1 See Comparison
CP030463.1 See Comparison
CP030449.1 See Comparison
CP030567.1 See Comparison
CP030433.1 See Comparison
CP030574.1 See Comparison
CP030421.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030430.1 See Comparison
CP030503.1 See Comparison
CP030508.1 See Comparison
CP030401.1 See Comparison
CP030383.1 See Comparison
NZ_CP151122.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
NZ_CP115475.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
NZ_CP053637.1 See Comparison
CP053635.1 See Comparison
CP049509.1 See Comparison
CP052021.1 See Comparison
CP052019.1 See Comparison
CP052016.1 See Comparison
CP051913.1 See Comparison
CP052003.1 See Comparison
CP052002.1 See Comparison
CP051995.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP052030.1 See Comparison
CP051953.1 See Comparison
CP051905.1 See Comparison
CP051941.1 See Comparison
CP051897.1 See Comparison
CP051925.1 See Comparison
CP051891.1 See Comparison
CP051924.1 See Comparison
CP049582.1 See Comparison
CP051916.1 See Comparison
CP049571.1 See Comparison
CP049473.1 See Comparison
CP049462.1 See Comparison
CP049539.1 See Comparison
CP049449.1 See Comparison
CP049537.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP049519.1 See Comparison
CP049418.1 See Comparison
CP049505.1 See Comparison
CP049412.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049495.1 See Comparison
CP049481.1 See Comparison
CP049393.1 See Comparison
CP049387.1 See Comparison
CP030492.1 See Comparison
CP049375.1 See Comparison
CP049372.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030593.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030640.1 See Comparison
CP030686.1 See Comparison
CP030610.1 See Comparison
CP030602.1 See Comparison
CP030582.1 See Comparison
CP030565.1 See Comparison
CP030698.1 See Comparison
CP030555.1 See Comparison
CP030567.1 See Comparison
CP030574.1 See Comparison
CP030442.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030613.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030503.1 See Comparison
CP030454.1 See Comparison
CP030466.1 See Comparison
CP030469.1 See Comparison
CP030457.1 See Comparison
CP030508.1 See Comparison
CP030463.1 See Comparison
CP030509.1 See Comparison
CP030449.1 See Comparison
CP030433.1 See Comparison
CP030421.1 See Comparison
CP030430.1 See Comparison
CP030401.1 See Comparison
CP030383.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
NZ_CP115475.1 See Comparison
CP049509.1 See Comparison
NZ_CP151122.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
NZ_CP053637.1 See Comparison
CP053635.1 See Comparison
CP049462.1 See Comparison
CP052021.1 See Comparison
CP052019.1 See Comparison
CP052016.1 See Comparison
CP051905.1 See Comparison
CP051897.1 See Comparison
CP051891.1 See Comparison
CP049582.1 See Comparison
CP049449.1 See Comparison
CP049571.1 See Comparison
CP052003.1 See Comparison
CP052002.1 See Comparison
CP049418.1 See Comparison
CP051995.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP049539.1 See Comparison
CP049537.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP052030.1 See Comparison
CP049412.1 See Comparison
CP051953.1 See Comparison
CP049519.1 See Comparison
CP049505.1 See Comparison
CP049393.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049495.1 See Comparison
CP049481.1 See Comparison
CP051941.1 See Comparison
CP051925.1 See Comparison
CP051924.1 See Comparison
CP049387.1 See Comparison
CP051916.1 See Comparison
CP051913.1 See Comparison
CP049473.1 See Comparison
CP049375.1 See Comparison
CP049372.1 See Comparison
CP030602.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030582.1 See Comparison
CP030593.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030565.1 See Comparison
CP030640.1 See Comparison
CP030698.1 See Comparison
CP030686.1 See Comparison
CP030610.1 See Comparison
CP030555.1 See Comparison
CP030613.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030567.1 See Comparison
CP030574.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030503.1 See Comparison
CP030442.1 See Comparison
CP030454.1 See Comparison
CP030508.1 See Comparison
CP030466.1 See Comparison
CP030469.1 See Comparison
CP030509.1 See Comparison
CP030457.1 See Comparison
CP030492.1 See Comparison
CP030463.1 See Comparison
CP052021.1 See Comparison
CP030449.1 See Comparison
CP030433.1 See Comparison
CP030421.1 See Comparison
CP030430.1 See Comparison
CP030401.1 See Comparison
CP030383.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
NZ_CP151122.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
NZ_CP053637.1 See Comparison
CP053635.1 See Comparison
CP049509.1 See Comparison
NZ_CP115475.1 See Comparison
CP052019.1 See Comparison
CP052016.1 See Comparison
CP052003.1 See Comparison
CP051897.1 See Comparison
CP051891.1 See Comparison
CP052002.1 See Comparison
CP049582.1 See Comparison
CP051995.1 See Comparison
CP049571.1 See Comparison
CP049449.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP049539.1 See Comparison
CP051970.1 See Comparison
CP049537.1 See Comparison
CP051962.1 See Comparison
CP049530.1 See Comparison
CP052030.1 See Comparison
CP049523.1 See Comparison
CP051953.1 See Comparison
CP049519.1 See Comparison
CP049418.1 See Comparison
CP051941.1 See Comparison
CP049412.1 See Comparison
CP051925.1 See Comparison
CP049505.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049495.1 See Comparison
CP051924.1 See Comparison
CP049393.1 See Comparison
CP051916.1 See Comparison
CP051913.1 See Comparison
CP051905.1 See Comparison
CP049387.1 See Comparison
CP049481.1 See Comparison
CP030582.1 See Comparison
CP049473.1 See Comparison
CP049462.1 See Comparison
CP049375.1 See Comparison
CP049372.1 See Comparison
CP030632.1 See Comparison
CP030649.1 See Comparison
CP030652.1 See Comparison
CP030714.1 See Comparison
CP030706.1 See Comparison
CP030593.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030640.1 See Comparison
CP030686.1 See Comparison
CP030610.1 See Comparison
CP030613.1 See Comparison
CP030619.1 See Comparison
CP030565.1 See Comparison
CP030669.1 See Comparison
CP030698.1 See Comparison
CP030555.1 See Comparison
CP030466.1 See Comparison
CP030469.1 See Comparison
CP030457.1 See Comparison
CP030567.1 See Comparison
CP030463.1 See Comparison
CP030602.1 See Comparison
CP030574.1 See Comparison
CP030536.1 See Comparison
CP030449.1 See Comparison
CP030539.1 See Comparison
CP030503.1 See Comparison
CP030433.1 See Comparison
CP030421.1 See Comparison
CP030508.1 See Comparison
CP030430.1 See Comparison
CP030509.1 See Comparison
CP030401.1 See Comparison
CP030492.1 See Comparison
CP030383.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
CP030442.1 See Comparison
CP030454.1 See Comparison
NZ_CP115475.1 See Comparison
CP051995.1 See Comparison
NZ_CP151122.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
CP053635.1 See Comparison
CP049509.1 See Comparison
NZ_CP053637.1 See Comparison
CP051985.1 See Comparison
CP051980.1 See Comparison
CP051975.1 See Comparison
CP051970.1 See Comparison
CP051962.1 See Comparison
CP052021.1 See Comparison
CP052019.1 See Comparison
CP052030.1 See Comparison
CP052016.1 See Comparison
CP051953.1 See Comparison
CP051941.1 See Comparison
CP052003.1 See Comparison
CP049539.1 See Comparison
CP049537.1 See Comparison
CP051925.1 See Comparison
CP049530.1 See Comparison
CP049523.1 See Comparison
CP052002.1 See Comparison
CP051924.1 See Comparison
CP049418.1 See Comparison
CP049519.1 See Comparison
CP051916.1 See Comparison
CP051913.1 See Comparison
CP051905.1 See Comparison
CP049505.1 See Comparison
CP049500.1 See Comparison
CP049498.1 See Comparison
CP049412.1 See Comparison
CP051897.1 See Comparison
CP049495.1 See Comparison
CP049393.1 See Comparison
CP051891.1 See Comparison
CP049481.1 See Comparison
CP049582.1 See Comparison
CP049473.1 See Comparison
CP049387.1 See Comparison
CP049571.1 See Comparison
CP049375.1 See Comparison
CP049372.1 See Comparison
CP049462.1 See Comparison
CP030632.1 See Comparison
CP049449.1 See Comparison
CP030666.1 See Comparison
CP030637.1 See Comparison
CP030640.1 See Comparison
CP030686.1 See Comparison
CP030610.1 See Comparison
CP030613.1 See Comparison
CP030619.1 See Comparison
CP030669.1 See Comparison
CP030602.1 See Comparison
CP030555.1 See Comparison
CP030567.1 See Comparison
CP030571.1 See Comparison
CP030574.1 See Comparison
CP030536.1 See Comparison
CP030539.1 See Comparison
CP030503.1 See Comparison
CP030649.1 See Comparison
CP030508.1 See Comparison
CP030652.1 See Comparison
CP030509.1 See Comparison
CP030714.1 See Comparison
CP030492.1 See Comparison
CP030582.1 See Comparison
CP030706.1 See Comparison
CP030565.1 See Comparison
CP030593.1 See Comparison
CP030442.1 See Comparison
CP030454.1 See Comparison
NZ_CP115475.1 See Comparison
CP030466.1 See Comparison
CP030469.1 See Comparison
CP030457.1 See Comparison
CP030463.1 See Comparison
CP030449.1 See Comparison
CP030433.1 See Comparison
CP030698.1 See Comparison
CP030421.1 See Comparison
CP030430.1 See Comparison
CP030401.1 See Comparison
CP030383.1 See Comparison
CP030387.1 See Comparison
CP030408.1 See Comparison
NZ_CP151120.1 See Comparison
NZ_CP151150.1 See Comparison
NZ_CP151122.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2