Plasmid CP030488.1

Sequence

Nucleotide Information

Accession CP030488.1
Description Staphylococcus aureus strain ER01009.3 plasmid unnamed1, complete sequence
Source insd
Topology circular
Length 24124 bp
GC Content 0.29 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008935595.1
Assembly Coverage 259.753




Similar Plasmids

based on Mash distance

CP030662.1 See Comparison
CP030680.1 See Comparison
CP030485.1 See Comparison
CP030397.1 See Comparison
CP030662.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP052026.1 See Comparison
CP051956.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP030680.1 See Comparison
CP030397.1 See Comparison
CP030485.1 See Comparison
CP049552.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP052026.1 See Comparison
CP030488.1 See Comparison
CP051956.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP030662.1 See Comparison
CP030680.1 See Comparison
CP030397.1 See Comparison
CP052026.1 See Comparison
CP030485.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP051956.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP151586.1 See Comparison
CP030662.1 See Comparison
CP030680.1 See Comparison
CP030485.1 See Comparison
CP030397.1 See Comparison
CP151574.1 See Comparison
CP030680.1 See Comparison
CP052026.1 See Comparison
CP051956.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP030662.1 See Comparison
CP030680.1 See Comparison
CP030485.1 See Comparison
CP030397.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP052026.1 See Comparison
CP051956.1 See Comparison
CP030485.1 See Comparison
CP030397.1 See Comparison
CP052026.1 See Comparison
CP030662.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP052026.1 See Comparison
CP051956.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison
CP030662.1 See Comparison
CP030680.1 See Comparison
CP030485.1 See Comparison
CP030397.1 See Comparison
CP151586.1 See Comparison
CP151574.1 See Comparison
CP051956.1 See Comparison
CP049552.1 See Comparison
CP049459.1 See Comparison
CP049404.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2