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v. 2024_05_31_v2
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Typing
Plasmid CP027421.1
Sequence
Nucleotide Information
Accession
CP027421.1
Description
Staphylococcus cohnii strain FDAARGOS_334 plasmid unnamed3, complete sequence
Source
insd
Topology
circular
Length
29852 bp
GC Content
0.30 %
Created at NCBI
March 9, 2018
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Staphylococcus cohnii (29382)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Bacillales (1385)
Family
Staphylococcaceae (90964)
Genus
Staphylococcus (1279)
Species
Staphylococcus_cohnii (29382)
Strain
Biosample
Curated Collection Information
Accession
6173347
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA,DC
Original Query Type
name
Coordinates (Lat/Lon)
38.89/-76.99
Address
USA,DC
ECOSYSTEM
Original Query
Homo sapiens,peripheral blood
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
Host-associated Age
10D
Host-associated Sex
female
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
CP027424.1
CP027420.1
CP027419.1
Similar Plasmids
based on Mash distance
CP027421.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2