Plasmid CP027364.1

Sequence

Nucleotide Information

Accession CP027364.1
Description Escherichia coli strain 88-3001 plasmid unnamed, complete sequence
Source insd
Topology circular
Length 74659 bp
GC Content 0.48 %
Created at NCBI March 26, 2018



Assembly

Genome Data Information

Accession GCF_003019015.1
Assembly Coverage 121.382


Biosample

Curated Collection Information
Accession 8579570

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP027326.1 See Comparison
NZ_CP013028.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP027326.1 See Comparison
NZ_CP013028.1 See Comparison
NZ_CP013028.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP013028.1 See Comparison
NZ_CP027326.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP027326.1 See Comparison
NZ_CP027326.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP013028.1 See Comparison
NZ_CP013028.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison
NZ_CP027326.1 See Comparison
NZ_CP027326.1 See Comparison
CP027364.1 See Comparison
NZ_CP013028.1 See Comparison
AP026762.1 See Comparison
AP026760.1 See Comparison
AP026756.1 See Comparison
AP026752.1 See Comparison
AP026743.1 See Comparison
AP026740.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2