Plasmid CP025215.1

Sequence

Nucleotide Information

Accession CP025215.1
Description Klebsiella pneumoniae strain HZW25 plasmid unnamed4, complete sequence
Source insd
Topology circular
Length 68637 bp
GC Content 0.46 %
Created at NCBI March 2, 2018



Assembly

Genome Data Information

Accession GCF_002966875.1
Assembly Coverage 221


Biosample

Curated Collection Information
Accession 8135572

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.26N;120.19E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.19
Address Qingchun Road (East), 采荷, Caihe, Shangcheng District, Hangzhou City, Zhejiang, 310016, China

ECOSYSTEM
Original Query Homo sapiens,blie
Classification host_associated,liver
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 36

DISEASE
Original Query Acute cholangitis
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MK372393.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_MH234502.1 See Comparison
NZ_KP776609.1 See Comparison
NZ_AP018141.1 See Comparison
MK715437.1 See Comparison
CP071169.1 See Comparison
NZ_LC218099.1 See Comparison
NZ_CP117992.1 See Comparison
LC744508.1 See Comparison
LC744482.1 See Comparison
LC744437.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP028536.2 See Comparison
NZ_CP073363.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP137857.1 See Comparison
NZ_MH286951.1 See Comparison
LC807801.1 See Comparison
LC807797.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_CP156720.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_AP018141.1 See Comparison
NZ_MH234502.1 See Comparison
NZ_KP776609.1 See Comparison
CP071169.1 See Comparison
MK715437.1 See Comparison
NZ_LC218099.1 See Comparison
NZ_CP101273.1 See Comparison
LC744508.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP117992.1 See Comparison
LC744482.1 See Comparison
LC744437.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP137857.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP028536.2 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP073363.1 See Comparison
LC807801.1 See Comparison
NZ_CP156720.1 See Comparison
LC807797.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_CP117992.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_AP018141.1 See Comparison
CP071169.1 See Comparison
NZ_MH234502.1 See Comparison
NZ_KP776609.1 See Comparison
MK715437.1 See Comparison
NZ_LC218099.1 See Comparison
LC744482.1 See Comparison
LC744437.1 See Comparison
LC744508.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP073363.1 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_CP028536.2 See Comparison
NZ_CP156720.1 See Comparison
NZ_CP137857.1 See Comparison
LC807801.1 See Comparison
LC807797.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_AP018141.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_KP776609.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MH234502.1 See Comparison
MK715437.1 See Comparison
NZ_LC218099.1 See Comparison
CP071169.1 See Comparison
LC744482.1 See Comparison
NZ_CP117992.1 See Comparison
LC744437.1 See Comparison
LC744508.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_CP028536.2 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP073363.1 See Comparison
NZ_CP137857.1 See Comparison
CP025215.1 See Comparison
LC807801.1 See Comparison
NZ_CP156720.1 See Comparison
LC807797.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_KP776609.1 See Comparison
NZ_MH234502.1 See Comparison
CP071169.1 See Comparison
NZ_AP018141.1 See Comparison
MK715437.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_LC218099.1 See Comparison
NZ_CP117992.1 See Comparison
LC744508.1 See Comparison
LC744482.1 See Comparison
LC744437.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP028536.2 See Comparison
NZ_CP073363.1 See Comparison
LC807801.1 See Comparison
NZ_CP156720.1 See Comparison
NZ_CP137857.1 See Comparison
LC807797.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_MH286950.1 See Comparison
CP071169.1 See Comparison
NZ_MH234502.1 See Comparison
NZ_KP776609.1 See Comparison
NZ_MF547511.1 See Comparison
NZ_AP018141.1 See Comparison
MK715437.1 See Comparison
LC744437.1 See Comparison
NZ_LC218099.1 See Comparison
NZ_CP117992.1 See Comparison
LC744508.1 See Comparison
NZ_CP081819.1 See Comparison
LC744482.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP073363.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP156720.1 See Comparison
NZ_CP137857.1 See Comparison
NZ_CP028536.2 See Comparison
LC807801.1 See Comparison
LC807797.1 See Comparison
NZ_MH286952.1 See Comparison
NZ_CP139407.1 See Comparison
NZ_MK372393.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_MH286951.1 See Comparison
NZ_MH286950.1 See Comparison
NZ_MH286949.1 See Comparison
NZ_MK372391.1 See Comparison
NZ_MF547511.1 See Comparison
MK715437.1 See Comparison
NZ_MH234502.1 See Comparison
NZ_KP776609.1 See Comparison
NZ_AP018141.1 See Comparison
CP071169.1 See Comparison
NZ_LC218099.1 See Comparison
NZ_CP117992.1 See Comparison
LC744508.1 See Comparison
LC744482.1 See Comparison
LC744437.1 See Comparison
NZ_CP102900.1 See Comparison
NZ_ON209135.1 See Comparison
NZ_ON023484.1 See Comparison
NZ_CP102875.1 See Comparison
NZ_CP102905.1 See Comparison
NZ_CP096179.1 See Comparison
NZ_CP048392.1 See Comparison
NZ_CP101273.1 See Comparison
NZ_CP095668.1 See Comparison
NZ_CP081819.1 See Comparison
NZ_CP095675.1 See Comparison
NZ_CP054412.1 See Comparison
NZ_MT621565.1 See Comparison
NZ_MT621566.1 See Comparison
NZ_CP091474.2 See Comparison
NZ_CP092650.1 See Comparison
NZ_CP054273.1 See Comparison
NZ_CP137857.1 See Comparison
NZ_CP073363.1 See Comparison
NZ_CP028536.2 See Comparison
LC807801.1 See Comparison
LC807797.1 See Comparison
NZ_CP141747.1 See Comparison
NZ_CP156720.1 See Comparison
NZ_CP139407.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2