Plasmid CP024509.1

Sequence

Nucleotide Information

Accession	CP024509.1
Description	Klebsiella pneumoniae strain KSB2_1B plasmid unnamed3, complete sequence
Source	insd
Topology	circular
Length	140704 bp
GC Content	0.53 %
Created at NCBI	Nov. 6, 2017

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Biosample

Curated Collection Information

Accession	4106427

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Australia
Original Query Type	name
Coordinates (Lat/Lon)	-24.78/134.76
Address	Australia

ECOSYSTEM

Original Query	Homo sapiens,rectal swab
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	healthy
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP024509.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	tap		copy
PGAG	replication initiation protein		copy
PGAG	IS5/IS1182 family transposase		copy
PGAG	glycogen synthesis protein GlgS		copy
PGAG	IS5/IS1182 family transposase		copy
PGAG	1,4-alpha-glucan-branching protein		copy
PGAG	glgC		copy
PGAG	glycogen synthase GlgA		copy
PGAG	glycogen phosphorylase		copy
PGAG	alpha-D-glucose phosphate-specific phosphoglucomutase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 166 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000129__CP018340	IncFII	140473	140700	minus	88.261	98	3.69e-71	274
relaxase	CP008789_00079	MOBF	129077	134332	plus	90.582	100	0	3133
mate-pair-formation	NC_014312_00116	MPF_F	104089	104391	plus	95.05	100	2.78e-59	201
mate-pair-formation	NC_014312_00118	MPF_F	104963	105691	plus	86.008	99	2.66e-140	441
mate-pair-formation	NC_023332_00154	MPF_F	105697	107115	plus	85.865	100	0	714
mate-pair-formation	NC_019389_00068	MPF_F	107645	108160	plus	90.698	89	9.63e-101	325
mate-pair-formation	NC_021502_00131	MPF_T	110309	112939	plus	87.457	99	0	1606
mate-pair-formation	NC_014312_00128	MPF_F	113358	113954	plus	89.447	94	2.14e-107	345
mate-pair-formation	NC_022609_00081	MPF_F	113974	114963	plus	87.576	100	0	580
mate-pair-formation	NC_021654_00016	MPF_F	115994	117955	plus	80.122	98	0	1027
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 13 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2