Plasmid CP014753.1

Sequence

Nucleotide Information

Accession CP014753.1
Description Escherichia coli strain PSUO103 plasmid, complete sequence
Source insd
Topology circular
Length 72996 bp
GC Content 0.49 %
Created at NCBI July 6, 2017



Assembly

Genome Data Information

Accession GCF_002215155.1
Assembly Coverage 180


Biosample

Curated Collection Information

Accession 4543670

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.8242N;77.8546W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.82/-77.85
Address Mount Nittany Expressway, College Township, Centre County, Pennsylvania, 16802, United States

ECOSYSTEM
Original Query Odocoileus virginianus,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Odocoileus virginianus (9874)

DISEASE
Original Query Diarrhoea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization




Similar Plasmids

based on Mash distance

NZ_CP101303.1 See Comparison
NC_013354.1 See Comparison
NZ_CP031909.1 See Comparison
NZ_CP031909.1 See Comparison
NZ_CP101303.1 See Comparison
NC_013354.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NZ_CP101303.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NC_013354.1 See Comparison
NZ_CP031909.1 See Comparison
NZ_CP031909.1 See Comparison
NC_013354.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NZ_CP101303.1 See Comparison
NC_013354.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NZ_CP101303.1 See Comparison
CP014753.1 See Comparison
NZ_CP101303.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NZ_CP101303.1 See Comparison
NZ_CP031909.1 See Comparison
NZ_CP031909.1 See Comparison
NC_013354.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison
NC_013354.1 See Comparison
NZ_CP157123.1 See Comparison
NZ_CP031909.1 See Comparison
NZ_CP157145.1 See Comparison
NZ_CP157164.1 See Comparison
CP157169.1 See Comparison
CP157131.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2