Plasmid CM008884.1

Sequence

Nucleotide Information

Accession CM008884.1
Description Serratia marcescens strain 9580 plasmid pNDM_9580, complete sequence, whole genome shotgun sequence
Source insd
Topology circular
Length 105614 bp
GC Content 0.55 %
Created at NCBI Dec. 21, 2017



Biosample

Curated Collection Information
Accession 7452559

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.767N;23.600E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.77/23.60
Address 24, Strada Lutoasă, Andrei Mureșanu, Cluj-Napoca, Cluj Metropolitan Area, Cluj, 400191, Romania

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query colonised
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NC_021501.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_OR497353.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_OR497353.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP082170.1 See Comparison
NC_025184.1 See Comparison
CM008884.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP030305.1 See Comparison
NC_021501.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NC_021501.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_OR497353.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NC_021501.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_OR497353.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_MH909345.1 See Comparison
NC_021501.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_OR497353.1 See Comparison
NC_021501.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_OL828744.1 See Comparison
NZ_CP082170.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_CP030305.1 See Comparison
NC_025184.1 See Comparison
NZ_OR497353.1 See Comparison
NZ_CP096851.1 See Comparison
NZ_MF042357.1 See Comparison
NZ_MH909345.1 See Comparison
NZ_MG462729.1 See Comparison
NZ_MF042355.1 See Comparison
NZ_KJ812998.1 See Comparison
NZ_KC887916.1 See Comparison
NZ_OL828744.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore