Plasmid AP028557.1

Sequence

Nucleotide Information

Accession AP028557.1
Description Serratia marcescens QC08 plasmid pQC08_1 DNA, complete sequence
Source insd
Topology circular
Length 243500 bp
GC Content 0.46 %
Created at NCBI July 26, 2023



Biosample

Curated Collection Information
Accession 22103778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoScopy
rgiBrucella suis mprFcopy
amrfinderplusterDcopy
amrfinderplusterWcopy
amrfinderplusterZcopy
PGAGhypothetical proteincopy
PGAGtrhAcopy
PGAGtrhEcopy
PGAGhypothetical proteincopy
PGAGtrhBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 252 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP016716MOBH171111171703plus10010001096
repliconBX664015IncHI2A211840plus99.52410001147
replicon000340__KU353730rep_cluster_10885666857630plus10010001779
relaxaseNC_012555_00231MOBH175007178150plus99.14110002122
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
mate-pair-formationNC_009838_00006MPF_F35464814plus1001000803
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3031231820plus98.8071000987
mate-pair-formationNC_005211_00030MPF_F3196233017plus99.716990734
mate-pair-formationNC_005211_00200MPF_F168662170074minus1001000933
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2