Plasmid AP027755.1

Sequence

Nucleotide Information

Accession	AP027755.1
Description	Escherichia coli 2017.02.04CC plasmid p2017.02.04CC_1 DNA, complete sequence
Source	insd
Topology	circular
Length	88234 bp
GC Content	0.49 %
Created at NCBI	Nov. 3, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Biosample

Curated Collection Information

Accession	38124483

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Viet Nam,Thai Binh
Original Query Type	name
Coordinates (Lat/Lon)	20.53/106.39
Address	Viet Nam,Thai Binh

ECOSYSTEM

Original Query	Homo sapiens,whole organism,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

AP027755.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

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Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	mef(B)		copy
amrfinderplus	qnrS1		copy
amrfinderplus	qacL		copy
rgi	aadA2		copy
rgi	aadA		copy
amrfinderplus	silB		copy
amrfinderplus	sul3		copy
amrfinderplus	tet(A)		copy
amrfinderplus	tet(M)		copy
amrfinderplus	silC		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 120 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	NZ_CP016035	MOBF	31504	31762	plus	80.899	96	3.41e-47	195
replicon	000204__CP008701_00115	IncR	20149	21044	plus	99.442	100	0	1626
replicon	000215__KC853434_00019	IncX1	63762	64208	plus	98.21	100	0	782
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 3 of 3 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2