Plasmid AP026488.1

Sequence

Nucleotide Information

Accession AP026488.1
Description Escherichia coli TUM9754 plasmid pMTY9754_NA1 DNA, complete sequence
Source insd
Topology circular
Length 152942 bp
GC Content 0.49 %
Created at NCBI July 23, 2022



Assembly

Genome Data Information

Accession GCF_025997235.1
Assembly Coverage 230


Biosample

Curated Collection Information
Accession 29882022

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query whole organism,animal
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication initiation proteincopy
PGAGplasmid stabilization proteincopy
PGAGinsF5_4copy
PGAGhypothetical proteincopy
PGAGIS6 family transposasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGphnC_2copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 169 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_019097MOBP9073593428plus95.3239901684
mate-pair-formationNC_019097_00056MPF_I99925102186minus98.4089201441
mate-pair-formationNC_022267_00057MPF_I112164113363minus981000756
mate-pair-formationNC_019111_00038MPF_I118141118518minus94.444943.71e-44160
mate-pair-formationNC_023290_00086MPF_I118571119095minus98.2861001.59e-99320
mate-pair-formationNC_015965_00072MPF_I119098119799minus98.2911001.54e-151473
mate-pair-formationNC_019097_00075MPF_I121094122074minus1001000658
mate-pair-formationNC_022267_00069MPF_I122130122777minus98.611918.25e-142445
mate-pair-formationNZ_CM001473_00069MPF_I122777123121minus91.3791001.6799999999999995e-54189
mate-pair-formationNC_019097_00085MPF_I128997129812minus1001004.33e-178550
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2