Plasmid AP024696.1
Sequence
Nucleotide Information
| Accession | AP024696.1 |
|---|---|
| Description | Escherichia coli FUJ80155 plasmid pFUJ80155-2 DNA, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 134802 bp |
| GC Content | 0.53 % |
| Created at NCBI | Sept. 1, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 21192434 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan,Aichi |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 35.00/137.25 |
| Address | Japan,Aichi |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | dfrA17 | copy | ||
| amrfinderplus | iucA | copy | ||
| amrfinderplus | iucB | copy | ||
| amrfinderplus | iucC | copy | ||
| amrfinderplus | iucD | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | catA1 | copy | ||
| rgi | mphA | copy | ||
| rgi | tetR | copy | ||
| rgi | dfrA17 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 154 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_021819_00066 | MOBP | 16117 | 16557 | minus | 85.034 | 99 | 2.17e-75 | 257 |
| relaxase | NC_017627_00068 | MOBF | 20360 | 23944 | plus | 97.824 | 100 | 0 | 2276 |
| relaxase | CP008715_00128 | MOBF | 70381 | 72069 | minus | 100 | 97 | 0 | 1093 |
| mate-pair-formation | 08-5333_00200 | MPF_Unknown | 72072 | 74267 | minus | 97.832 | 100 | 0 | 1439 |
| replicon | 000095__NZ_CP014273_00094 | IncFIB | 1 | 978 | plus | 98.569 | 100 | 0 | 1729 |
| replicon | 000136__AP014877_00014 | IncFIA | 32197 | 33054 | plus | 95.455 | 100 | 0 | 1369 |
| replicon | KF954760 | IncFII | 101269 | 101559 | minus | 91.065 | 99 | 3.49e-107 | 394 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |