Plasmid AP024353.1
Sequence
Nucleotide Information
| Accession | AP024353.1 |
|---|---|
| Description | Salmonella enterica SEOhiM2008 plasmid pSEOhiM2008a DNA, complete genome |
| Source | insd |
| Topology | circular |
| Length | 2264 bp |
| GC Content | 0.52 % |
| Created at NCBI | Dec. 10, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (28901) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 32179441 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Japan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 36.57/139.24 |
| Address | Japan |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: AP024351.1
- Description: Salmonella enterica SEOhiM1960 plasmid pSEOhiM1960b DNA, complete genome
- Source: insd
- Created at NCBI: Dec. 10, 2022
-
Host Taxonomy
Assigned Host: Salmonella enterica (28901)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain:
-
Biosample
Accession: 32179440 - GEOGRAPHICAL INFORMATION
- Original Query: Japan
- Original Query Type: name
- Address: Japan
- Coordinates (Lat/Lon): 36.57/139.24
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | hypothetical protein | copy | ||
| PGAG | rop | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 4 of 4 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | HQ328804 | MOBP | 1163 | 1336 | plus | 91.954 | 100 | 2.04e-62 | 244 |
| replicon | KU302809_00001 | rep_cluster_2335 | 693 | 1239 | minus | 93.989 | 90 | 0 | 828 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |