LOCUS       OY754441                4820 bp    DNA     circular BCT 28-OCT-2023
DEFINITION  Escherichia coli isolate S142 genome assembly, plasmid: pS142-5.
ACCESSION   OY754441
VERSION     OY754441.1
DBLINK      BioProject: PRJEB62104
            BioSample: SAMEA113542892
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     Complete genomic sequence of E. coli strain S142.
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="S142"
                     /db_xref="taxon:562"
                     /plasmid="pS142-5"
     gene            complement(54..989)
                     /locus_tag="FGAS142_46480"
     CDS             complement(54..989)
                     /locus_tag="FGAS142_46480"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; WP_011107001.1 replication
                     initiation protein (Pseudomonas syringae group genomosp. 3)
                     [pid:29.3%, q_cov:90.4%, s_cov:67.7%, Eval:9.2e-23, low
                     identity]; Prodigal_4651"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723472.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDRVGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDSSVKA
                     LKYAAAIERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDKRFMAL
                     CMLENGYSQKAIAAMLEVSTRTIRNWKSGK"
                     /name="hypothetical protein"
     gene            1647..2528
                     /locus_tag="FGAS142_46490"
     CDS             1647..2528
                     /locus_tag="FGAS142_46490"
                     /inference="similar to AA sequence:RefSeq:WP_047369808.1"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; WP_047369808.1 50S
                     ribosome-binding GTPase (Enterobacteriaceae) [pid:31.6%,
                     q_cov:96.6%, s_cov:94.9%, Eval:1.4e-49]; TIGR:TIGR03918;
                     GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase
                     HydF [Name:TIGR03918, Eval:1.6e-14, score:51.5, bias:0.0];
                     Domain:cl26334:MnmE_helical MnmE helical domain. TrmE, also
                     called MnmE and previously designated ThdF (thiophene and
                     furan oxidation protein), is a GTPase involved in tRNA
                     modification to create 5-methylaminomethyl-2-thiouridine in
                     the wobble position of some tRNAs. This protein and GidA
                     form an alpha2/beta2 heterotetramer. [Protein synthesis,
                     tRNA and rRNA base modification] [Superfamily,
                     Aligned:6-267, Eval:3.6e-44, score:149.6]; Prodigal_4652"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding GTPase"
                     /protein_id="CAK0723477.1"
                     /translation="MEYIDKSTLNSKEKIRQAIEKKIREIKGYTPRVGIFGSTGVGKSS
                     LCNALFGRDVAPVSNVAACTREIQEIHIKPEDGNEGGLTIIDFPGVGETLERDKEYYNL
                     YKENVAKLDLVVWVIKSDERAYAISQKVYNDILLPNIKKCPVVFFINQIDKIEPTEDDE
                     GELLWDKKKNEPTKEQLASVNEKILEVSTAFSVPASYIIPTSVKRKFNISKAMETIIDI
                     LPKEKKYALYREAGEEIKTEKMAESAEKGVWDTIKEWTGEAWDNVKDVVVEVVAATVVA
                     AGKKILSKLKFW"
                     /name="50S ribosome-binding GTPase"
     gene            complement(2644..3177)
                     /locus_tag="FGAS142_46500"
     CDS             complement(2644..3177)
                     /locus_tag="FGAS142_46500"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4653"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723482.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQRLDIAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFSVLGWGMKTILDRNYNATAAVYQKVVTLED
                     KLAEKTVTGKSRKN"
                     /name="hypothetical protein"
     gene            complement(3180..4106)
                     /locus_tag="FGAS142_46510"
     CDS             complement(3180..4106)
                     /locus_tag="FGAS142_46510"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; WP_010974226.1 Ti-type
                     conjugative transfer relaxase TraA (Agrobacterium
                     tumefaciens complex) [pid:31.1%, q_cov:77.3%, s_cov:20.2%,
                     Eval:1.7e-15, partial hit]; TIGR:TIGR02768; TraA_Ti:
                     Ti-type conjugative transfer relaxase TraA [Name:TIGR02768,
                     Eval:6.1e-24, score:82.3, bias:6.6]; Prodigal_4654"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723487.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKGEYAKRKDLEYTEHGNMPE
                     WARDHPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVLDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIDRTPEQYFRRYNARYPERGGAKKDSGNLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERHPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="hypothetical protein"
     gene            4282..4680
                     /locus_tag="FGAS142_46520"
     CDS             4282..4680
                     /locus_tag="FGAS142_46520"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4655"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723492.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKELKYDLETSPNPDA"
                     /name="hypothetical protein"
     Typing          complement(55..989)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.158"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(3184..4106)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.13"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aaaaaacctg ctgctcaaaa acacgccaaa aagacgctgt tatctgatat aggctatttt
       61 ccgcttttcc agtttcgaat ggttcgagta gaaacctcca acatcgccgc aatagctttc
      121 tgagaatatc cattctccag catacatagc gccatgaaac gcttgtcatc gtaggcttcg
      181 cctttagcga taccaccttt ccggcctctc ttggcctgta tttctggtgt gtgcgtatca
      241 gccacatact gtgcgaaagt ttccggcgtg aagttcctgt gcgtgtattt cgcaatgctc
      301 ttgccaatag cccgacattc aggcggagaa agcggaacgg gaagcgatgc gttgtacatt
      361 tcgacacgct gaatcacggc atcaagccac tgtgagaatg ctggccaacc ctgacgaatc
      421 gccctgtaag cccatttgcg cgtcatttcg aacagatggc agtttcgccc catcccgtaa
      481 tgtttatcga tgctacggcg cgctgaggcg ctcaaatcga gataatcagc cagttcatcg
      541 agggtatagg cctcctcgcg ccactccatc acctgccatt ccaggtggaa cggatttttg
      601 caaatcagtc cgctgtagtt cacatctgca caaagtttct cacacagcga acgttcaatc
      661 gcagcggcgt atttcagcgc cttaaccgag ctgtccggcg cggttctcac ggcgatattg
      721 agtgcgtaga gcaggtgagc atgaccgttc acaggatttt ttacggtgat gttcggcgcg
      781 ggagcgttcc ggtcgctcca gtcaatcgca gctcctacac ggtcaacgtc aaaaaccagc
      841 cagaactgcg catgaggctg gttctgctgg atgtaccgcg caagaagcgc acgccctttg
      901 ccggagatgc gaagaccaaa agcgagatca tccgtgtgat agggacggtg gggtaaattt
      961 tcttcgaagt attgaagcgc ggcgctcatg tgttacgatt ccttccaggt tatcgaccga
     1021 catcgcccct gtattttcgt gaaagtcttg gcggatagac acgaatttca ggggcgtttg
     1081 tttttcagtc gcttacacta cccccaacaa caaaacctgt cgagccttcc cgcaaaaacg
     1141 atccatttac cataactcct gttgtacgaa ccccttaaaa cgctctcaat cgctttctga
     1201 cgcaaaaaac gcaaaaatac aaggaaacac cagggcaacc ccgaaaaatg cgtcagaatt
     1261 atttttatgg ggctgcataa ctatgcacaa aagtgattcg cgaacagttt caaccgttca
     1321 gaagggcgaa tgggtcaaaa cagcaaattt tctcatccat atccttgcat agatggataa
     1381 aacagttcga tatcagcatc agacacaata attgccatag ttcatcccgc cttctctcca
     1441 aagcaacatg actaaaaaac agtcttggga tagtttgttt tctgagctcc atgtacccca
     1501 cctttttagg aaatcgctta aaaggtttag tctcacaaca acctgaacac agctctagat
     1561 aacatttatc gaatacaata aaataccact tataaaatag gtggtttatt tataagtaat
     1621 atttcttgac aatataggtt cttaaaatgg aatatattga taaatcgaca ctaaacagca
     1681 aagaaaaaat tagacaagca atcgaaaaga aaataaggga aataaaaggt tacacgccac
     1741 gagtcggtat ttttggatca actggcgtag gtaaatcatc attatgcaat gcattatttg
     1801 gtcgtgatgt agccccagtc agtaacgtcg ctgcttgcac aagagagatt caagaaattc
     1861 atatcaagcc agaagatgga aatgagggag gacttacgat aatagacttt cctggtgttg
     1921 gtgaaacctt ggaaagagac aaagaatatt ataatctata caaagagaat gttgcaaagt
     1981 tagacctagt tgtatgggta ataaagtctg atgaaagggc ttacgcaatt tctcaaaagg
     2041 tatataacga tatattgcta cctaatataa aaaaatgtcc tgttgtattt ttcataaacc
     2101 aaatagataa aatagaacca acagaagacg atgaaggtga acttctttgg gataaaaaga
     2161 aaaacgagcc gacaaaagag cagttagcta gtgtaaatga gaaaatacta gaagtaagta
     2221 ctgccttttc tgttcctgct tcatacatta tacctacatc agtcaaaaga aagtttaata
     2281 tttctaaagc aatggagaca ataatagaca tcctcccaaa ggagaaaaaa tatgctctct
     2341 atcgcgaagc aggagaagaa ataaaaacag aaaaaatggc agaaagcgca gaaaagggcg
     2401 tatgggacac cattaaagaa tggacaggtg aagcctggga taacgtaaag gatgtagttg
     2461 ttgaagtagt agctgcaact gttgttgctg caggtaagaa aatactatca aaacttaaat
     2521 tctggtaatt cattaagatt caggatgatt actatcctga atcttagtta tcaacgtttc
     2581 tttttccaag atctgtttta tccgatgtga acagcgaaca attcaaacac ctcacagagc
     2641 gcgtcagttt ttccggctct tacccgtgac agttttctcc gccagtttat cttccagtgt
     2701 cacaactttc tgatacaccg ccgctgtggc gttgtagttc ctgtcgagaa ttgttttcat
     2761 cccccatccg agcacactga acataaccag aaaggccact gacaccccac ccagccattt
     2821 ccagctatac cctttaaggg tgttgtattc ctgcacgata ttgctgtgaa ttgtcgcaat
     2881 atccctgttc agggcatccg cgtttgcctt catgtttgcg actgactctt ccagccgctg
     2941 aaaatcctga ctgatgcgct cacctatcag ccctgcaata tccagcctct gcacttcgtt
     3001 tctgacttca tccctgacct gttttgccac accgtcagaa atatcccgat atccgcgaag
     3061 tgtttccctt gccacagcca gagaatcagc aacagctttc tgttgctcca ttgcggtatg
     3121 ttgcagatgc tccaccgata acaggagcgt gagtaatttt tcttctgtgc tggccatgtt
     3181 cagaatccca tagaaaatcc acgtgacggt gatttaaccc gttcaggttc agttcggttc
     3241 tgtctgctca ctctgtctct catgtcaaag ccatgctccc gcgcaacatc atgttgtagc
     3301 cttctgacca gttcatgttg cttaaccgga gtgtccagcc attccctgat gtcatgcccg
     3361 accgttcgcg cctgttcaag atggcgggaa tagtccggtt cagaccgttt ttgcatgatg
     3421 tcatgacgct gggcatcatc aagccgtccg gcagcttcaa aacccagatg cacttcggga
     3481 tgccgttcaa tgccctgttc tttcagcgtc cggcagtcaa tgaagcccct ttcaaagcca
     3541 tgctttctca tatgttcgtt gtgcttcacc tcccagcgtt ttcgcaattc cctcaactgc
     3601 tctttttgct gagtgagagt caggtttccg gaatcctttt tcgcacctcc ccgctcggga
     3661 tacctagcgt tatagcgccg gaaatactgt tccggtgtac ggtcaatgcc atcattcaca
     3721 cgctggctca tcatgatatg cgcatgaggc tgttcgcctc cgtcaatgct cgctttcgga
     3781 ttgtgaatgg caaaactcca ggcgtgccgt tcgccggctt cctgacgtac aaaatccagc
     3841 accagctcaa ggcgctgttc cggtgtcagt tcacggggca gcgcgatttc cagttcccga
     3901 taagtcgaac cgttcgctcg ttcaaactgg tcagccgcct gccagaaatg ggaaggatga
     3961 tccctggccc attccggcat gtttccgtgc tccgtgtatt ccagatcttt ccgtttcgca
     4021 tactcccctt tgcgctcgat gtaatcggcg tggtttgcag cctgtccctt gcctccaaat
     4081 ttaacgctga ggtgataggt tgccacggtt tcagccctcc gcaggagcgc actgtttctc
     4141 gacgaaggag agaaacatat aagtgcgctt ccttctaatt ttacgaatta gaaggaagat
     4201 acccccctgc acccaccgac cgcaagcgat atactgcacg accacaacac accgcaaaaa
     4261 acaccaagga gcaccacgaa catgcgcatc agcaacatcg aatggctgaa gaaacggatc
     4321 ggattcatca ggaagctcgg agaacagacc gcacgacaga gacagattat tgacctgctc
     4381 gacaacgaag caggactcac agaacaggaa cgcaaactcc tccacgtact ggcaacagcg
     4441 gaaaaaaacg acttacaggc acaggagagc gaacgaaaac aggcggtcca aaaacgaatc
     4501 gagggaaaaa aacaacgacg agaacgcaat caccggctct ttctcgcggc tgggctactg
     4561 atcgaagcag gactggtaga cacaaaaaca ggcgagctat gctataaaaa agacaggata
     4621 ttacaggcac ttaaggaact taagtacgat ctggagacat ccccaaaccc agacgcgtaa
     4681 gtgcctccat ccgtgttccg attccctggt gcttcctcgc tcattcgctc gctacgctcg
     4741 gtcatgagac tgcggcgagc actaccagca caatcatgcg gaaaacagca ccattgcaag
     4801 gctgaacggt gaaaaacgac
//
