LOCUS       OY754440                5632 bp    DNA     circular BCT 28-OCT-2023
DEFINITION  Escherichia coli isolate S142 genome assembly, plasmid: pS142-4.
ACCESSION   OY754440
VERSION     OY754440.1
DBLINK      BioProject: PRJEB62104
            BioSample: SAMEA113542892
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     Complete genomic sequence of E. coli strain S142.
FEATURES             Location/Qualifiers
     source          1..5632
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="S142"
                     /db_xref="taxon:562"
                     /plasmid="pS142-4"
     gene            271..801
                     /locus_tag="FGAS142_46410"
     CDS             271..801
                     /locus_tag="FGAS142_46410"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4644"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723418.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="hypothetical protein"
     gene            808..1041
                     /locus_tag="FGAS142_46420"
     CDS             808..1041
                     /locus_tag="FGAS142_46420"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4645"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723423.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="hypothetical protein"
     gene            1522..2574
                     /locus_tag="FGAS142_46430"
     CDS             1522..2574
                     /locus_tag="FGAS142_46430"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4646"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723428.1"
                     /translation="MNLQQRINKLPQLSSSFSFEKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELMDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     gene            2576..3442
                     /locus_tag="FGAS142_46440"
     CDS             2576..3442
                     /locus_tag="FGAS142_46440"
                     /inference="similar to AA sequence:RefSeq:WP_003021093.1"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; WP_003021093.1 DMT family
                     transporter (Francisella tularensis) [pid:30.6%,
                     q_cov:86.1%, s_cov:84.2%, Eval:9.6e-16]; TIGR:TIGR00950;
                     2A78: carboxylate/amino acid/amine transporter
                     [Name:TIGR00950, Eval:2.8e-16, score:57.7, bias:31.2];
                     COG:COG0697:RhaT Permease of the drug/metabolite
                     transporter (DMT) superfamily [Category:GER, Aligned:1-284,
                     Eval:1.3e-17, score:78.0]; Prodigal_4647"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="CAK0723433.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            complement(4646..4837)
                     /locus_tag="FGAS142_46450"
     CDS             complement(4646..4837)
                     /locus_tag="FGAS142_46450"
                     /inference="similar to AA sequence:RefSeq:WP_002213433.1"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; WP_002213433.1 Rop family
                     plasmid primer RNA-binding protein (Bacteria) [pid:63.9%,
                     q_cov:96.8%, s_cov:95.3%, Eval:3.5e-20]; Prodigal_4648"
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="CAK0723438.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4869..5225
                     /locus_tag="FGAS142_46460"
     CDS             4869..5225
                     /locus_tag="FGAS142_46460"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4649"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723443.1"
                     /translation="MGVMIPMKRERMLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGE
                     PVARSGKLPTLAPPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRR
                     LRLAVREQGARDDS"
                     /name="hypothetical protein"
     gene            5215..>5632
                     /locus_tag="FGAS142_46470"
     CDS             5215..>5632
                     /locus_tag="FGAS142_46470"
                     /note="*inference: COORDINATES:ab initio
                     prediction:Prodigal:2.6.3; Prodigal_4650"
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="CAK0723448.1"
                     /translation="MIVKFHARGKGGGSGPVDYLLGRERNREGATVLQGNPEEVRELID
                     ATPFAKKYTSGVLSFAEKELPPGGREKVMASFERVLMPGLEKNQYSILWVEHQDKGRLE
                     LNFVIPNMELQTGKRLQPYYDRADRPRIDAWQTLV"
                     /name="hypothetical protein"
     Typing          4471..4552
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          3827..4014
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          4..1145
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          5216..5631
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="1.97e-84"
ORIGIN
        1 atcaccatta cggtctgcat gaccccaacg ccccggagaa ccgccggacg ctgacccttc
       61 ctgataacct gccggaaacg aaacaggcgc ttgctgaggg cgtcacacgc gggatagacg
      121 cgctttacca tgccggagag ataaaaggcc gtcaggatgt gattcaggcg ctcacagagg
      181 cggggcttga agtggtcagg gtgacgcgaa gcagtatcag cattgcagac ccgaacggcg
      241 ggaggaatat cagactgaaa ggagcgtttt atgagcaatc ttttacagac gggcgcggag
      301 ttcgagaaaa agctgaaaga gagagccgaa tctacagaga aaatgctgaa cgacgagttc
      361 aggaagctcg aagaatctgt aaacagggaa ctgacctcaa acgaatcttt aatcaggaac
      421 gctatcaacg accatacaac agccctgaaa gaactgctgg agaggtatca gaaaacgacc
      481 gtcgatacga tggacgcgca ctggaaaacc gtactgaaaa tgagcgtgaa acgctggctg
      541 tggctgatta tcgtctcagt actgatgttt gccacgaccg ggagtctgct gtggtaccag
      601 ggcatgaaga taaacgcgaa tatgaatatt ctccgcgagc agaaagagag tctggagaag
      661 ctgaacgcga agacatgggg cgtgcgttat cacgaggaca gcaacggacg ttttctggtg
      721 ttgccgaagg ggatgaaagc cgaaacgaac tggacgaagg acaacggcaa actgaacgca
      781 gtgagactgg tgcaggagtg acagagcatg acggagctgg aaagacattt gctgaacgca
      841 ttagagcaac tgcaacagga ctatatgcag cggctgaacg aatgggagaa cgccttcgtg
      901 gaattgcaga aaatgttttc gcttacgcaa cgggacaacg cgatgctgaa cgggcgagtc
      961 atgcagttga gtcagcaggt gcagcacttg agcgagcgga cagaacgctt gagccagtta
     1021 tacagcgaga acaggagata agggatgaac ggctgatgca ggaacgcgaa catgagttat
     1081 ctctggagcg ggagcgtcag ccggaaatcc aggagcggac actggatggc ccttcgctgg
     1141 gatggtgaaa ccatgaaaaa tgacgtgttc agtggattaa ggcgggctaa tgtggcctgt
     1201 agcatctggt tgcataggta ttcatgcggt taaaatttat caggtgcgat cgcggcagtt
     1261 tttcgggtgg tttgttgcca tttttacctg tctgctgccg tgatcgcacc gaacgcgttt
     1321 tggcggtgcg tacaatgcga cgttatggta aatggagcgg attttcagga aggagtgata
     1381 ctaacaactc gaacactgtg caaataatga tttttttaaa atatcggtaa cgataataaa
     1441 ttatttcgtt ttacgccggt aataaatata atgtagtttc agtatataaa aaaatatatg
     1501 aggtgtcttg tgggagcttt catgaatctt caacaacgta taaataaact accacaatta
     1561 tcatccagtt tttcatttga aaaagatatt gataatattc attcatttat ctttaacgaa
     1621 acttctaaag ataaaattga agatttacta agaaaatggg tgtcaggcaa tcagccctgt
     1681 gtatttggta aattggcaag caagaaaatt aaagggcttg atttccattt atctattgta
     1741 aatagccccc aactatataa tgatgatggt catttgtttg attttttgcg taatgaaaga
     1801 gttcgtttta aagaacgcgc aagaagagga gaggtcagtg cgcatctcat ttattttatt
     1861 catccacaac ttgcctttgc tcgtccatca gaagagttaa tggacataca aaaatatatt
     1921 tgttcgctgc atatgccaga gtgctatcca ataaaagagg atgttattta tactgaaagc
     1981 gtaccatttc aggataaaga tgggctaaaa atatataagg ctggtgttaa tgttttttac
     2041 tcttctgctc atagaacaag aaatcatgat agaagaatac cagggggaat acttatttct
     2101 gtaaatgccc cggggcattt tatgaggctg gcgatagaaa aaggtttcta taaagatcaa
     2161 gaacaagcgt tagcggatat tcgtaacatg actattcagt ctgttggtaa gggtgggtat
     2221 tcacatccgg aagggatttc tacaacatgg cattcagaat ctaatttgga tcgttttgga
     2281 tgcccagtgc acaccggtaa tagttcttat tacagcggtt tttatcatac tgatgtatta
     2341 attccaggag aattaactaa ggatgaaaga ttgctccatg aaatagaaaa tagtgatcca
     2401 atgatcttca actggaatgt attgttttat gtttcattag aagagtttcc tatagatgat
     2461 ccttattatg gagagtttat tggtattcct gtagatgatg catctatgtt ttttaactcc
     2521 tttcaaccaa ggaaatttga aaacaaaccc ctttatgaga aagaggatga ttaatatgat
     2581 taaaggaatg ctttttgctt ttttagcagc gttctcatgg ggggcagcta tcgtaatgag
     2641 caaaaaagga gttgaagaac tagatgccgg aggggtgttt ttctggcaga tttgtagtgc
     2701 agtaatacta tcttggatag ttctttttat aaaaagaaaa aaactcccat taaactcaaa
     2761 agcgatactt gcttatgcga caggcgtttt tgaaccattc ttagcgtata cttttacact
     2821 ctacggactt tattttattt cagcaggaag cgcatcaatt attttttcac ttgaatcagt
     2881 gtttatattg gtgttgtctg ttcttatttg ctcagttaaa attaattccc cgcaatattt
     2941 tatattgttc cttataggtg caattgttgg cagtattttg gtagccttgc cagacatcag
     3001 taatggatcg aataatattg ttggatattg tcttgttgtt gccggtgtgt tatcggcagc
     3061 attttatgtt gttatatcgt ctcgccttat taaatcgttt gagcctatca cattattgag
     3121 cggacagttg acattctccc ttatactgtc atcgctcttt atttttatat ctaaatcatc
     3181 aatttatctt ccgttggaat ccgtgattat tgttttttca tctggaatat tacaatattt
     3241 tttagctttt tgtttttact tgaactcctt gcgttggctc ccagttcatt tggcagggat
     3301 aatgttgtac tttattccgc tagttgcatt atttttgtca tggttgtttt tggatgaaca
     3361 attcacattc ttacaggggg taggatttat tgtaactgtg ctaagtgtat attttcttaa
     3421 cagaaaatac tcagaggagt aacattctgt tcaggattgc ccccccggcc tccatcgata
     3481 ccgtgccaaa tgcacgtaaa aaacgggagc gtttctggtg tcggaatgta accaaggggg
     3541 tcagaggcgc gctaaaacgc tctcagggga gtcaaataga gacgtttgta acaaaaagat
     3601 caaaggatcc tcttgagatc ctttttttct gcgcgtaatc tgctgcctgt aaacgaaaaa
     3661 accgccttgc agggcggttt gatcgaaggt taagtcagct tgcagactgc ttaaccaggt
     3721 aactgtctta tgcgagacga gtcaccaaaa ttgttcttct agtgtagccg cactccggca
     3781 gccacttcaa gtactctcta aatatctcgc acatgacttt taccaatggc tgctgccagt
     3841 ggcgctttgt ggtgtctttt ccgggttgga cccaagagaa cagttaccgg agaaggcgca
     3901 gcagtcgggc tgaacggggg gttcctgcat acagcccagc ccggagcgaa ctgcctaagt
     3961 cgccccgaga taccagaaga cgtgagctat gagaaagcgc cacgtgtccc gtaagggaga
     4021 aaggcggaaa aggtatccgg taatcgatat ggcgggaacg tgggggcgca ggagggagcg
     4081 attcaccgga aacggtgatg atctttaagc cacgtcgggt ttcgccaccg ctggcggatt
     4141 tcatggttga gccgcaaggc tcccacagat gcaccgaaaa agtgtctgtt ttgtgaagtc
     4201 cgtcaggggg gcggagccta tggaaaaagc gcctccggcg cggcctttcc cggggtttcg
     4261 ttttttgcgc acatgttctt tcctggttta tccccgggtt ctgtggataa cagggttagc
     4321 gtttttgaga aaggagagtc cgctcgccgc agccgaacga ccgagcgtag cgagtcagtg
     4381 agcgaggaag cggaagagcg cctgaactgg cattttctcc ttacgcatct gtgcggcatt
     4441 tcacaccgga catggcgcac ttttcataca atccgcactg atgccgaatg gttaagccag
     4501 tatacactcc gctatcgcta cgtgactggg tcagggcttc gccccgacac cccaaaggtc
     4561 aacggcctga cgcgccctgg cgggcttgtc tgctcccggc atccgctcac agacaagctg
     4621 tgaccgtctc cgggagctgc atgtgtcagc ggttttcacc gtcatccccg aagcgtgcga
     4681 ggcaactgcg gtaaagctca tcggcgtggt cgtgaagcga ttcacagatg tctgcctgtt
     4741 catccgcgtc cagttcgttg agcttctcca gcagcgttaa tgtctggcct ctgatgaagc
     4801 gggccatgtt aagggcggtt ttttcctgtt tggtcactga tgcctccgtg taaggggggg
     4861 ttctgttcat gggggtaatg ataccgatga aacgcgagag gatgctcacg atacgggtta
     4921 ctgatgatga acatgcccgg ttactggaac gctgtgaggg taaacaactg gcggtatgga
     4981 tgcggcgggt ctgcctgggt gagccggttg cccgttccgg gaagctgccg acactggcac
     5041 cgccgttact gcgtcagctg gccgccatcg ggaataacct taaccagaca gcgaggaagg
     5101 tgaacagcgg gcagtggtct tccggtgacc gggttcaggt ggtggccgca ctgatggcca
     5161 tcggggatga gctgcgccgg ctgcgtctgg cggtcagaga acagggggcg cgggatgata
     5221 gttaagtttc atgccagggg aaaaggtggt ggcagtggtc cggttgatta cctgctggga
     5281 agggagcgta accgggaagg ggcaacggtg cttcagggga atccggaaga ggtccgggaa
     5341 ctcatcgatg ccacgccatt tgcgaagaaa tacacgtcag gtgttctgtc gttcgcggag
     5401 aaggagctgc cgcctggagg gcgtgaaaaa gtgatggcga gctttgagcg tgtactgatg
     5461 cccggtctcg agaaaaatca gtacagcatc ctgtgggtgg agcaccagga caagggacgg
     5521 cttgagctga attttgtcat tccgaacatg gagctacaga ccggaaaacg cctccagccg
     5581 tactacgacc gggcagacag gccgagaatt gatgcctggc agacgctggt ga
//
