LOCUS       NZ_OZ040954             1783 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Escherichia coli isolate 30821_1#330 plasmid 5, complete sequence.
ACCESSION   NZ_OZ040954
VERSION     NZ_OZ040954.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9068043
            Assembly: GCF_964054465.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Arredondo Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2024) UNIVERSITY OF OSLO, Postboks 1122 Blindern,
            0317 Oslo, Norway
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964054465.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 11:56:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,082
            CDSs (total)                      :: 4,968
            Genes (coding)                    :: 4,761
            CDSs (with protein)               :: 4,761
            Genes (RNA)                       :: 114
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 207
            CDSs (without protein)            :: 207
            Pseudo Genes (ambiguous residues) :: 0 of 207
            Pseudo Genes (frameshifted)       :: 79 of 207
            Pseudo Genes (incomplete)         :: 150 of 207
            Pseudo Genes (internal stop)      :: 39 of 207
            Pseudo Genes (multiple problems)  :: 51 of 207
            Pseudo Genes (short protein)      :: 1 of 207
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OZ040954.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1783
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="30821_1#330"
                     /db_xref="taxon:562"
                     /plasmid="5"
     gene            1..990
                     /locus_tag="ABGU72_RS25410"
     CDS             1..990
                     /locus_tag="ABGU72_RS25410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001529700.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEILNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRSS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(717..908)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.409"
                     /coverage="100.0"
                     /evalue="6.18e-88"
ORIGIN
        1 atgaaaaatc ctgaactcca gaacctcacg gactattccc cctcagatgc gccctgggac
       61 gctcacagaa gcgtttctga cgacgtggga gggatttacc tgcttgcggc cgaatatgag
      121 cgctacgggg cgcgtatggc cctctgtggc ggtttattgc gtttcgggtg gtctaccctc
      181 aaggaaaccg gagaaacgcg tctgaggctg cgtgaggcgc atttctgccg tgtccggcac
      241 tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta ccagtccctg
      301 ccgcgtatcg tggcggatta ccctgatgcc cgctggatgt tcctgaccct gaccgtgcgc
      361 aactgtgcga tcggggagct gggcgagata ctgaaccgga tgaatgcagc tttccagcga
      421 ctgaaggatc gcaaggagtt ccggcctgtg cagggctgga tacgtaccac ggaagtcacc
      481 cgcagcagtg acggcagcgc acatccccac ttccacaccc tgatgatggt gccgccctca
      541 atgctatctg gtgacggtta cgtaaaacat gctcgctggg ttgaactctg gcgggagtgc
      601 ctgcgggtca gttacgaccc gaatgttgat gtccgggcag taaaaccccg gaagccgaag
      661 gacggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggtgcggt ggccgaaacc
      721 ctgaagtatt ccacgaagcc ggctgacatg gtggccgatc ctgaatggtt cctcgaactg
      781 acccgccaga cgcacaagcg ccgctttgtg gcgactggcg gcgcactcaa agacgtactg
      841 aagctcgatc aggaaaccga cgcagacatg gtgatcgggg atgatatttc cgagggcgac
      901 gatgacggtt cccgcatcgc gttcgagtgg aaaactgagg tcagaaagta ccgtcgctca
      961 ccgacgaaag ataaaaccga atcagagtaa cggggtgtcg gggctgcgcc ctgaccatga
     1021 ggactttggg catccgtcac cttggtggcg gtgtaccaaa gtcacatctt gtccgattgg
     1081 ttttactccg atgcaggata gggctaacgc cgcaaagtgc tagcactcga ttgcctagtt
     1141 cggaatccga acttagggtt ttgcgatccg taatacggat tttttttgac gggacaagat
     1201 gtgtttttgg agtaccgcca tcacgatgcg ggtaccaaaa acgatccgtc agggctgcgc
     1261 cccgacaccc tgccaacacc tcacgccgcc agattgaaat ctgccagcgt tcgccgttcc
     1321 tgaaatcgtc aaacgctaaa tcgtggggtc ccgctggctt gccagtgggt tccgatttag
     1381 tgattgacga ccgcgcccgt aaaacactgc cgacaggtgg ttgtgatcac gcagtgagcg
     1441 caaccacctg gtaagcggtt ttgggttttt ttgggggtga tttaacgcgg ttttcgggtg
     1501 gcaaatctcg cgcgcgatcc ttgtatttat acttaaggga taactctggg attcaaattg
     1561 gcctccagcc cttgtcccgc aaggcttgag ggcacatttg ctccgaaatg ggtttagaag
     1621 tattctgtcg gaagtggtcg cgttaaaagc gacccccgca acgacgggca tcgttcgggg
     1681 gcgtgaccac ctgtagagat tcgaattggt gatacggcta acacaggtga tatggcaatg
     1741 ataacacgtc agatgagcca tcgcccacaa tcgggtggtg tgc
//
