LOCUS       NZ_OZ040730             4116 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Escherichia coli isolate 30859_5#21 plasmid 3, complete sequence.
ACCESSION   NZ_OZ040730
VERSION     NZ_OZ040730.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9068033
            Assembly: GCF_964052875.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Arredondo Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2024) UNIVERSITY OF OSLO, Postboks 1122 Blindern,
            0317 Oslo, Norway
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964052875.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 12:01:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,843
            CDSs (total)                      :: 4,731
            Genes (coding)                    :: 4,533
            CDSs (with protein)               :: 4,533
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 198
            CDSs (without protein)            :: 198
            Pseudo Genes (ambiguous residues) :: 0 of 198
            Pseudo Genes (frameshifted)       :: 79 of 198
            Pseudo Genes (incomplete)         :: 145 of 198
            Pseudo Genes (internal stop)      :: 38 of 198
            Pseudo Genes (multiple problems)  :: 55 of 198
            Pseudo Genes (short protein)      :: 1 of 198
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OZ040730.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4116
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="30859_5#21"
                     /db_xref="taxon:562"
                     /plasmid="3"
     gene            356..505
                     /locus_tag="ABGU66_RS24190"
     CDS             356..505
                     /locus_tag="ABGU66_RS24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_003978816.1"
                     /translation="MPSEYDEQRDATDTQLPGEYDLFDLMAQVTEENLHAPVDFGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            889..1257
                     /locus_tag="ABGU66_RS24195"
     CDS             889..1257
                     /locus_tag="ABGU66_RS24195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001273382.1"
                     /translation="MANFNPGPRTAIAAVRDSKNDIETWKKNGIRREEIVTVLNERYGL
                     NISLVAFDKALYRLRKSTDEPSLADVDSVSAAETNFSEASGPENGFFLSENDFMRAEEE
                     SQRMVESFRDSLGRKKGF"
                     /name="hypothetical protein"
     gene            2230..2748
                     /locus_tag="ABGU66_RS24200"
     CDS             2230..2748
                     /locus_tag="ABGU66_RS24200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001445155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_096185299.1"
                     /translation="MSEKAKKVGRRSLSKRRESLIKELWGDELSELNIWNRKEHDGFTT
                     IPRTLNYINRIIDYLAGAGSPVSQTYLSLWCRVFDEGFVEIRDKDALAFESGFSGQRAV
                     TTWLGRMKKLRELGLISTKPGTSGEFHYVIMLNPLYVIKKSYESNGWKRDERYNALFSR
                     MQEVGAEWE"
                     /name="hypothetical protein"
     gene            2745..3308
                     /locus_tag="ABGU66_RS24205"
     CDS             2745..3308
                     /locus_tag="ABGU66_RS24205"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000999222.1"
                     /translation="MNDMKAVRHRYKQRYDFAASEVVGAFDELRSLDWSLEIASLSDVE
                     MSKRWIGAVDPNGVARLPPNGGWDWVKLYNGYLKNPSAFVCAIKSEGKLCALIGGGVSD
                     SKVVTKLHYLESAPYDTALSGYALDISVTYVVTVANAMGSEYSAIYEPNSKVREIAIND
                     YGFSEDNLFGTSKDFALYLPMSRI"
                     /name="hypothetical protein"
     gene            complement(3318..3470)
                     /locus_tag="ABGU66_RS24210"
     CDS             complement(3318..3470)
                     /locus_tag="ABGU66_RS24210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001341064.1"
                     /translation="MLAHAVELKKATEPCSSGTAGAFRQRVKARRAEQGRSNQQPEKLY
                     GVLVG"
                     /name="hypothetical protein"
     gene            complement(3766..3912)
                     /locus_tag="ABGU66_RS24215"
     CDS             complement(3766..3912)
                     /locus_tag="ABGU66_RS24215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050863271.1"
                     /translation="MHEPPVQSDCCALSGNYHLESNPERHAKAPLAAANGKRMYKRLLT
                     QSS"
                     /name="hypothetical protein"
     Typing          149..363
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.425"
                     /coverage="100.0"
                     /evalue="1.6000000000000006e-59"
     Typing          complement(3627..4093)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.477"
                     /coverage="91.0"
                     /evalue="1.31e-158"
ORIGIN
        1 atgcttgtca ggggggcgga gcctatggaa aaacggcaac gccgcatcct ttttccgctc
       61 ttcctgattt ccgctaagtc tctttatcca gccattcgtg agctggcaac gcccgccgca
      121 gtctcacggc aggagcgtag cgaccgagtg agcgaggagg cgtcatttca ccgggatctg
      181 catttcgcac ttacacaccg gtgctgcatt tcccggtacc acatgaagca ctttcgtaaa
      241 tcattactgc gttgtaacat tttaagcccg tatacactcc gctagcgcta cgtgactggt
      301 tcagggctgc gccccgaaac ccgctaacaa ccccttagct actggatatc accccatgcc
      361 atctgaatat gatgaacaac gggatgcgac tgatacgcag cttcccggcg aatatgacct
      421 ttttgattta atggcgcagg ttactgaaga gaacctgcac gccccggtgg attttggccc
      481 gcctgtcggc agggaagcgt tataactttt ttcgctggtc agcgtacgtg taatacgccg
      541 gtattacatc ttatttcttt attttcatgt gattacaggt ggttgtaata cgttgcgtat
      601 tacataaata aacgggaaat tcagttttta ccttttaatt catgcaattg cgatgaaaat
      661 cgcggttgcg tatggtgtat ggccatttaa gggataatgt aacctgactt ttaaagaatg
      721 aatctatctt tggcagcgca tgagatcgat aaaaagcgtt ccacatcagg cggttcatgg
      781 atacatgaac cggaaaggac aaaaataaga caaatgtaag acattttttg cgttttactc
      841 ttatttttgg actattatga gacaaatgta agacattatg ggcggtatat ggcgaatttt
      901 aaccctggtc caagaacagc cattgcagct gtcagggatt ccaagaacga tatagaaacc
      961 tggaagaaaa atggtatccg tagggaagag attgtgactg tgctgaatga acgttacggc
     1021 ctgaatatct cactggttgc gtttgataag gctctttaca gattgagaaa aagtacagat
     1081 gaaccgtctc ttgctgatgt ggattcagtg tctgctgcag aaacgaattt ctctgaagcc
     1141 agtgggcctg aaaatggttt ttttctgtcc gagaatgact tcatgcgagc agaagaagaa
     1201 tctcaaagaa tggttgagtc attcagagat agccttggca ggaagaaagg attctgattt
     1261 tgaattctaa gtagtgaaat agtggatcct ctactcgaaa ttgtcggata cctgcaatta
     1321 cctaccgtgc cttacggctt ggtcaatgcc ttacggccac gcaataaatt gcgtccccgt
     1381 tcaccgtttt cggataagaa gaacatcgga aacaggactt accccggctg aatggtgtga
     1441 aattctgcgc tatgcacttg cgcgcatact catgcatgcc gtaaaaacat agcctgcgcg
     1501 tttctggcgg gttttcgggt ggtttgttgc ctgttttacc ggtttcccgt cagaaacgcc
     1561 ctgagggcct ctcaggcggt gcacgcaaga gatgttatgg taaatggttt ctgaggtgta
     1621 agcgaaaact cgagttttga cgccattctg agtaggtaat ttgcagacgg aataaatact
     1681 ggcgagcaat aagctcatca acaaaaaatg gagatcctaa gatggataga gaaaccctat
     1741 acctactcaa aacgttagac cataacaatg ccttgcttga cgatattatc cgaagaaaga
     1801 tgggtaggta ctacaacacg aagattttgc gtgattcctg tgatgctatt gaagccgaac
     1861 tacgacgtcg aggaatcatt taaaaagacg aagcccgctt atgtgggctt tttcattgcg
     1921 cattcatggc accccttcct ccccccttaa accccctaag aaccccattc agcacagcga
     1981 gcacaacgat tacattagag cacattgaga acagcgagta caaaatagcg cataactaat
     2041 tgaaaaataa gaccgtaacc gtgaagaata ttacatctca atatttgtgt tgacaaaaaa
     2101 aaagaatcat atcaaatgag atgttggtta atgatgtgct tggtttttgt gttattacgc
     2161 ataactcatt gaatataata ggttttttgt tgataatatt ttcatgttga attgactttt
     2221 gggggataaa tgtcagagaa ggcaaaaaaa gtaggtaggc gctctctatc aaaaagaaga
     2281 gaaagtctaa taaaagagct ttggggggat gagctttccg aactgaatat atggaacagg
     2341 aaagaacacg atggatttac aacaatccca agaacattga attatatcaa taggataatc
     2401 gattaccttg ctggcgctgg atctcctgtg tcacagacat acctcagttt atggtgtcga
     2461 gtttttgacg agggattcgt cgaaattagg gataaagatg ctctggcatt tgagtcaggg
     2521 tttagtgggc agcgagcggt gactacttgg ctaggaagaa tgaaaaagct acgggagctg
     2581 ggactgatat caacgaagcc tggtacttct ggcgagtttc attatgtaat catgttgaat
     2641 ccactttacg taattaaaaa gtcatatgaa tcaaatggat ggaaaaggga tgagcgttac
     2701 aacgctctat tttctaggat gcaggaagtg ggggcggagt gggaatgaac gacatgaaag
     2761 ctgttcgtca ccgatataag cagagatatg attttgctgc gtcagaagta gtgggggcgt
     2821 ttgatgaact tagaagtttg gattggagtt tagaaatcgc atctttaagt gacgtggaaa
     2881 tgtcaaagag atggattggg gctgttgatc ctaacggtgt tgcaagatta ccacctaacg
     2941 gtggatggga ctgggttaag ctctataacg gctatttgaa gaaccctagc gcattcgtct
     3001 gtgccattaa atcagaaggc aagctatgcg ctctgattgg tggcggggtt tctgatagta
     3061 aagtggtaac taagctgcat taccttgaat cagcccctta tgacacggct ctttcaggat
     3121 atgcactgga tatttctgtt acgtatgttg ttactgtcgc gaatgcgatg ggaagcgaat
     3181 actcagccat ctatgagcca aatagcaaag tcagagagat agctataaat gattatggat
     3241 ttagcgagga caacttgttt gggacaagta aagatttcgc tctgtatcta ccaatgagcc
     3301 ggatttaacc ggctcattta tcctaccagt acgccgtaga gtttttctgg ctgttggttt
     3361 gatcggcctt gctctgctcg tcttgctttt acgcgctggc gaaatgctcc ggctgtacca
     3421 gaagagcatg gttccgtcgc ttttttaagt tcgaccgcgt gagctaacat attatttccg
     3481 ttttttcgtg agttagtaca aagcatatga ggtgacggat acgtcaactt catagtaact
     3541 gtactgtatt gtagaagaga tgcgcaagtc gcagaattaa tgcgaccctt cattgacgag
     3601 gcgaagagta aacgcgtatc ttctttgaaa acgaaaaaac cacccggcaa ggtggttttt
     3661 cgaaggttca ttaaaccggc aagtttatga accgtggtaa cagggtgtac aagaccactg
     3721 ccaccaaatt cgtccttcca gtttagccgt agttgggctg atacttcaag aactctgcgt
     3781 tagtaatctc ttgtacatcc tcttaccgtt ggctgctgcc agtggcgctt ttgcatgtct
     3841 ttccgggttg gactcaagat gatagttacc ggataaggcg cagcagtcgg actgaacggg
     3901 gggttcgtgc atacagtcca gcttggagcg aactgcctac ccggaactga gtgtcaggcg
     3961 tggaatgaga aaccgcggcc ataacagcgg agtgacaccg gtaaaccgaa aggcaggaac
     4021 aggagagcgc acgagggagc taccaggggg aaacgcctgg gatctttata gtcctgtcgg
     4081 gtttcgccgc cactgatttg agcgtcagat tttgtg
//
