LOCUS       NZ_OZ040467             5167 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Escherichia coli isolate 30859_5#29 plasmid 3, complete sequence.
ACCESSION   NZ_OZ040467
VERSION     NZ_OZ040467.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9068056
            Assembly: GCF_964050955.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Arredondo Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2024) UNIVERSITY OF OSLO, Postboks 1122 Blindern,
            0317 Oslo, Norway
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964050955.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 11:54:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,062
            CDSs (total)                      :: 4,949
            Genes (coding)                    :: 4,724
            CDSs (with protein)               :: 4,724
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 225
            CDSs (without protein)            :: 225
            Pseudo Genes (ambiguous residues) :: 0 of 225
            Pseudo Genes (frameshifted)       :: 80 of 225
            Pseudo Genes (incomplete)         :: 168 of 225
            Pseudo Genes (internal stop)      :: 41 of 225
            Pseudo Genes (multiple problems)  :: 52 of 225
            Pseudo Genes (short protein)      :: 1 of 225
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OZ040467.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5167
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="30859_5#29"
                     /db_xref="taxon:562"
                     /plasmid="3"
     gene            1..210
                     /locus_tag="ABGU67_RS25290"
     CDS             1..210
                     /locus_tag="ABGU67_RS25290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001618649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001096196.1"
                     /translation="MAKLGENTPHIIDATVDFMASSQAFREYLKKLPPDNTIPPALTDE
                     HVPLYIRRLEYYRLLYRPKQTESY"
                     /name="hypothetical protein"
     gene            complement(276..809)
                     /locus_tag="ABGU67_RS25295"
     CDS             complement(276..809)
                     /locus_tag="ABGU67_RS25295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168770.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTILDRNYNATAAVYQKVVTLED
                     KLVEKPVTGKSRKN"
                     /name="hypothetical protein"
     gene            complement(812..1738)
                     /locus_tag="ABGU67_RS25300"
     CDS             complement(812..1738)
                     /locus_tag="ABGU67_RS25300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001331297.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTAPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            1915..2313
                     /locus_tag="ABGU67_RS25305"
     CDS             1915..2313
                     /locus_tag="ABGU67_RS25305"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222914.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLIDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKELKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            complement(2517..3431)
                     /locus_tag="ABGU67_RS25310"
     CDS             complement(2517..3431)
                     /locus_tag="ABGU67_RS25310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001271348.1"
                     /translation="MSAALQYFDENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWLVMEWREEAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGSKSKRSTVATSARTL
                     KPWEALGISRAWYYQLKKRGLVE"
                     /name="replication initiation protein"
     Typing          complement(2657..3431)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.778"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(816..1738)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atggcaaaat taggtgaaaa caccccacat attatcgatg ctactgtaga ttttatggca
       61 tcaagccagg catttcgtga gtatctgaaa aaacttcccc ctgataacac aataccgcca
      121 gctcttactg atgagcacgt accgttatat atacgaaggc tggaatacta tcgtctgctt
      181 tatcgaccaa agcagacaga atcatattga aaaaaacggt gaacggttcg cgaaattctt
      241 tcgcgggtcg tgaggcgttg gacaagcgaa gcgcgtcagt ttttccggct cttccccgtg
      301 acaggtttct ccaccagttt atcttccagt gtcacaactt tctgatacac cgccgctgtg
      361 gcgttgtagt tcctgtcgag tattgttttc attccccatc cgagcacaca gaacataacc
      421 agaaaagcca ctgacacccc acccagccat ttccagctat accctttaag ggtgttgtat
      481 tcctgcacga tattgctgtg aattgtcgca atatccctgt tcagggcatc cgcgtttgcc
      541 ttcatgtttg cgactgactc ttccagccgc tgaaaatcct ggctgatgcg ctcacctatc
      601 agtcctgcca cgtccagctt ctgcacctca tttctgactt catccctgac ctgttttgcc
      661 acaccgtcag aaatatcccg atatccgcga agagtttccc ttgccacagc cagagaatca
      721 gcaacagctt tctgttgctc cattgcggta tgttgcagat gctccaccga taacaggagc
      781 gtaagtaatt tttcttctgt gctggccatg ttcagaatcc catagaaaat ccacgtgacg
      841 gtgatttaac ccgttcaggt gcagttcggt tctgtctgct cactctgtct ctcatgtcaa
      901 agccatgctc ccgcgcaaca tcatgttgca gccttctgac cagttcatgt tgcttaaccg
      961 gagtgtccag ccattccctg atgtcatgcc cgaccgttcg cgcctgttca agatggcggg
     1021 aatagtccgg ttcagaccgt ttttgcatga tgtcatgacg ctgggcatca tcaagccgtc
     1081 cggcagcttc aaaacccaga tgcacttcgg gacgtcgttc aatgccctgt tctttcagcg
     1141 tccggcagtc aatgaagccc ctttcaaagc catgctttct catatgttcg ttgtgcttca
     1201 cctcccagcg ttttcgcaat tcccgcaact gctctttttg ctgagtgaga gtcaggcttc
     1261 cggaatcctt tttcgcacct ccccgctcgg gatacctggc gttatagcgc cggaaatact
     1321 gttccggtgt acgttcaatg ccatcattca cacgctgact catcatgata tgcgcatgag
     1381 gctgttcgcc gccgtcaatg ctcgctttcg gattgtgaat ggcaaaactc caggcgtgcc
     1441 gttcgccagc ttcctgacgt acaaaatcct gcaccagttc aaggcgctgt tccggtgtca
     1501 gttcacgggg taatgcaatt tcaagttccc tataggtcga accgttcgca cgttcaaact
     1561 ggtcagccgc ctgccagaaa tgggaaggat tatccctggc ccattccggc atgtttccgt
     1621 gtgcggaata ttccaaatcc tgacggtcgc ggtatttctc tttgcgctcg atgtaatcgg
     1681 cgtggtttgc agcctgcccc ttgccaccaa atttaacgct gaggtgatag gttgccacgg
     1741 tttcagccct ctgcaggagc gcactgtttc tcgacgaagg agagaaacat ataagtgcgc
     1801 ttccttctaa ttttacgaat tagcacggaa gataccccct gcacccgccg accgcaagcg
     1861 atatactgca cgaccacaac acaccgcaaa aaaacaccag ggagcatcac gaacatgcgc
     1921 atcagcaaca tcgaatggct gaagaaacgg atcggattca tcaggaagct cggagaacag
     1981 accgcacgac agagacagat tattgacctg atcgacaacg aagccggact cacagaacag
     2041 gaacgcaaac ttctccacgt actggcaaca gcggaaaaaa acgacttaca ggcacaggag
     2101 agcgaacgaa aacaggcggt ccaaaaacga atcgagggaa aaaaacaacg acgggaacgc
     2161 aatcaccggc tctttctcgc ggctgggcta ctgatcgaag caggactggt agacacaaaa
     2221 acaggcgagc tatgctataa aaaagacagg atattacaag cacttaagga acttaagtac
     2281 gatctggaga catccccaaa cccagacgcg taagtgcctc catccgtgtt ccgattccct
     2341 ggtgcttcct cgctcattcg ctcgctacgc tcggtcatga gactgcggcg agcactacca
     2401 ccacaatcac gcggaaagcc gcgccattgc agggctgaac ggggaaaaac ggcaaaaaac
     2461 ctgctgctca aaaagacgcc agaaaggcgc tgttatctga tataggctta tttggtctac
     2521 tctacgagac ctcgtttttt cagttggtaa taccaggcgc gactgatccc taatgcctcc
     2581 cacggtttca gcgtgcgtgc agatgtagct actgtgctgc gcttagactt agaaccgccc
     2641 ttgcgaccgc gtgcagcctg aatttctggc gtgtgcgtat cagccacata ctgtgcgaaa
     2701 gtttccggcg tgaagttcct gtgcgtgtat ttcgcaatgc tcttgccaat agcccgacat
     2761 tcagccagtg aaagcggaac gggaagcgat gcattgtaca tttcgacacg ctggatcacc
     2821 gcttcaagcc actgtgagaa cgctggccag ccctgacgaa tcgccctgta agcccatttg
     2881 cgcgtcattt cgaacaggtg gcagtttcgc cccatcccgt aatgtttatc gatgctacga
     2941 cgctctgagg cgctcaaatc gagataatca gccagttcat cgagggtata ggcttcctcg
     3001 cgccactcca tcaccagcca ttccaggtgg aacggatttt tgcaaatcag gccgctgtag
     3061 ttcacatccg cacaaagttt ctcacacagc gaacgttcaa ccgctgcggc atatttcagc
     3121 gccttaaccg aggcatcagg cgcggttctc acggcgatgt tgagtgcgta gagcaggtga
     3181 gcgtgtccgt tcacaggatt tttaacggtg atgttcggcg cgggagcgtt ccggtcgctc
     3241 cagtcaatcg cagccccctc gcggtcaacg tcaaaaacca gccagaactg cgcatgaggc
     3301 tggttctgct gtatgtaccg cgcaagaagc gcacgccctt tgccggagat gcgaagacca
     3361 aaagcgagat catccgtgtg atagggacga tggggtaaat tttcgtcgaa gtattgaagc
     3421 gcggcgctca tgtgttacga ttctctccgg gttatgcgac ctacacgccc tctgtatttc
     3481 atgttgaatc ttgccggatc tggacatgat ttcaggggcg tttgtttttc agtcgcttac
     3541 actacaccca acggcaaatc ctgtcgaacc ttcccgaaaa cccgatccat ttaccataac
     3601 tcccgttgta cgcccccctt aaaacgccct cagtcgcttt ctggcgcaaa aaacgcaaaa
     3661 agacaagaaa acaccaggcc aaaccagaaa aacgcgtcag aatcgttttc agggcgttgc
     3721 ataactatgc acgaaagcga tgtgcgatcg gtttcgtgcg ttctgaacac cgaacggctc
     3781 aaaacgacaa gttttctccc ctggtgcgtg gcgctctgac ggggtttcct gtttccaaac
     3841 ttcacatctc gccaggacaa aaaaaaaccg acctggggtc ggtggcaaga atcagagtct
     3901 atgggaaata ttttagttat cggatgctca atattcacaa acgcaaaaaa tgcctcagtg
     3961 atgccctaaa acaacctttc cagaaggagt ccgcgcttta cgatgcacgg aagagataaa
     4021 aaaccccaca aaagtgggga accaagagaa acaacaatta caggttgttg gttgtgttcg
     4081 aacaacgatg aagtagctac gctaaataat aattaccgta caggccctac atattcaaca
     4141 ctaaatttaa gatcctgacg aaggatttat aaatgcacga aaacacatag acagacaaat
     4201 tcactaaatt catacacaaa aacaagtgta gttttctaag taaattagat tcgacaacca
     4261 attagtttat ccacatcgca ttccactctt gctacaccaa tcacatttct tgatatgtaa
     4321 tagcagaaaa aataaaacca gacaccaata gaccaaaaaa caaacattca acaagaaaca
     4381 ttttgaacaa tatcacaaaa ctgtcacaac catcatcaga ctattgaaaa aaactggttg
     4441 ctgttttata aaagcgactg taacaacctc cactctatag ttccattagt ttaaagtgtc
     4501 acacaaactg agcatccatt tgttttcctt acttttgccc ctgtattcca aggggttttt
     4561 ttataactta aagattagca caccacacaa aaacaataaa aaaaaacgac aagttataca
     4621 ataaaaccag tactatccat acagctaatt acatataaat actattaaac catctggaca
     4681 ttaaaaataa actcttataa cataaaatta atgcggttcc ggtaccatat gtcagggata
     4741 atgtgcaaat ggaggtatcg gaactgcatt tcagttcatt attaattaat gacaaaaaaa
     4801 acctctgcga gcgcagaggg ggtaaggaat gttcccggtc ataatatgtc gatagtgttt
     4861 atatacatac agaacaagaa caacaaccag ccaactaata aatattttat tttttagagc
     4921 tgaaacctta aagctcactt ccattccata cattgttata aaccttatgt tgaaaactga
     4981 aagtaagtac ggcagactta ttaagttgcg tgcagtcttt tcacgttata caaacaagaa
     5041 cacctgcgaa gttatttctc cttacatatc cccctatgcc aacgggggat tttttctggt
     5101 tcactaacgc ataaataata gtgacaccct atcattcaca aaccgtgata atataaggat
     5161 tatcatc
//
