LOCUS       NZ_OZ040276             2067 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Escherichia coli isolate 30345_1#220 plasmid 3, complete sequence.
ACCESSION   NZ_OZ040276
VERSION     NZ_OZ040276.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9068076
            Assembly: GCF_964049475.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Arredondo Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2024) UNIVERSITY OF OSLO, Postboks 1122 Blindern,
            0317 Oslo, Norway
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964049475.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 11:51:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,124
            CDSs (total)                      :: 5,009
            Genes (coding)                    :: 4,821
            CDSs (with protein)               :: 4,821
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 188
            CDSs (without protein)            :: 188
            Pseudo Genes (ambiguous residues) :: 0 of 188
            Pseudo Genes (frameshifted)       :: 81 of 188
            Pseudo Genes (incomplete)         :: 134 of 188
            Pseudo Genes (internal stop)      :: 32 of 188
            Pseudo Genes (multiple problems)  :: 49 of 188
            Pseudo Genes (short protein)      :: 1 of 188
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OZ040276.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="30345_1#220"
                     /db_xref="taxon:562"
                     /plasmid="3"
     gene            1..990
                     /locus_tag="ABGU62_RS25620"
     CDS             1..990
                     /locus_tag="ABGU62_RS25620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_346714079.1"
                     /translation="MKNPEIQNLADYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWVFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          993..1074
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.386"
                     /coverage="90.0"
                     /evalue="1.57e-30"
     Typing          complement(717..908)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.373"
                     /coverage="100.0"
                     /evalue="1.34e-84"
ORIGIN
        1 atgaaaaatc ctgaaatcca gaacctcgcg gactattccc cctcagatgc gccctgggac
       61 gctcacagaa gcgtttctga cgatgtggga gggatttacc tgcttgcagc cgaatatgag
      121 cgctacgggg cgcgtatggc cctctgcggc ggtttactgc gtttcgggtg gtctaccctc
      181 aaggaaaccg gagaaacgcg tctgaggctg cgtgaggcgc atttctgccg tgtccggcac
      241 tgtcctgtct gccagtggag gcgttccctg atgtggcaag ctcgtttcta ccagtccctg
      301 ccgcgtatcg tggcggatta tcccgatgcc cgctgggtgt tcctgaccct gaccgtgcgc
      361 aactgtgcga tcggggagct gggcgagatg ctgaaccgga tgaatgcggc ttttcagcgc
      421 atgaaggttc gcaaggagtt ccggcccgtg cagggctgga tacgcaccac ggaagtcacc
      481 cgcggcagtg atggtagcgc acacccgcac ttccacaccc tgatgatggt gccgcctggc
      541 atgctaaatg ggaaaagtta cgtcaggcat gaacgctggg ttgagttgtg gcgggagtgc
      601 ctgcgggtca gttacgaccc gaatgttgat gtccgggcag tgaaaccccg taagccaaag
      661 gacggtgaat cgctggcctg cgcgactgcc gaactggtgc gcggtgcggt ggccgaaacc
      721 ctgaaatatt ccacgaagcc ggctgacatg gtggccgatc ctgaatggtt cctcgaactg
      781 acccgccaga cacacaagcg ccgctttgtg gcgaccggcg gcgcactcaa ggacgtactg
      841 aagctcgatc aggaaactga tgccgacatg gtgatcgggg atgatatttc cgagggcgat
      901 gatgacggtt cacgcatcgc gttcgagtgg aaaaccgagg tcagaaagta ccgtcgctca
      961 ccgacgaaag ataaaactga atcaggctag cggggtgtcg gggcgcagcc ctgaccagat
     1021 ggtaattgta atagcgtcgc gtgtgacggt attacaatta cacatcctgt cccgaaaatt
     1081 cccgccgttt ctcggttttt tgagcatcgc agatcgcacg acaaacgaaa cgaagtgaag
     1141 tttgtataag tgcgcacttc gtgagttttc tgtactgcca gtttgttgac tgcgcggaac
     1201 ggctgcggca caaaaacggc aaaatgattt gttgtccgtt cgccagaatt ttgcgcggcc
     1261 gtggtggctg cggtgccaaa aatcatccgc gcgttaagtg cggatgcgcc tttagacatt
     1321 tctctccttc gtcgggaaac tgtgcgctcc tgcggagggc ttaacgacgc agaactgtcg
     1381 atgctctgcc agtgttcagg cgaaaaaatc gggacaagat acatgtttgt attcccgcta
     1441 cacggtcggt actccaaact ccactaggtc agggctgcgc cccgacaccc cgccaacgct
     1501 tcacggtacg cgaaaaaaat ccgcgcaccg ttcaccgttc cctgattcgt caaacagaaa
     1561 atcgtggggg cccgcgcctc cggcgtgggt tccgattttg tgattgacga cggcaccgaa
     1621 aaaacactgg ggatggtggt tggtgtcacg cagtgaggcc aaccacctgc aagacggttt
     1681 ttgttgttca caaaattagt gtgaaagtct gtggatgaga tgggtgtaag cgggtgggtt
     1741 tgtgtggttc tgagccactc aaaaagcgct caatttttaa gcgttctctc gcgcgtgatc
     1801 cttgtattta tacttaaggg ataactctag gattcaaatt cgccttcagc ccttgtgccg
     1861 caaggcctga ggggggattt gtcggaaaat ggttttggag ttattctgtc gggagtggtc
     1921 gcattaaaag cgacccccgc aacgagggca atcgttcggg ggtgtgacca cctgtaggaa
     1981 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
     2041 gccatcgccc actatcgggt ggtgcgc
//
