LOCUS       NZ_OZ040272             2185 bp    DNA     circular CON 20-MAY-2024
DEFINITION  Escherichia coli isolate 30821_1#88 plasmid 6, complete sequence.
ACCESSION   NZ_OZ040272
VERSION     NZ_OZ040272.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA9068099
            Assembly: GCF_964049545.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Arredondo Alonso,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAY-2024) UNIVERSITY OF OSLO, Postboks 1122 Blindern,
            0317 Oslo, Norway
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_964049545.1-RS_2024_05_20
            Annotation Date                   :: 05/20/2024 11:52:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,015
            CDSs (total)                      :: 4,904
            Genes (coding)                    :: 4,704
            CDSs (with protein)               :: 4,704
            Genes (RNA)                       :: 111
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 70 of 200
            Pseudo Genes (incomplete)         :: 148 of 200
            Pseudo Genes (internal stop)      :: 35 of 200
            Pseudo Genes (multiple problems)  :: 43 of 200
            Pseudo Genes (short protein)      :: 1 of 200
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OZ040272.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="30821_1#88"
                     /db_xref="taxon:562"
                     /plasmid="6"
     gene            1..966
                     /locus_tag="ABGU63_RS25060"
     CDS             1..966
                     /locus_tag="ABGU63_RS25060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            970..1236
                     /locus_tag="ABGU63_RS25065"
     CDS             970..1236
                     /locus_tag="ABGU63_RS25065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(1306..1488)
                     /locus_tag="ABGU63_RS25070"
     CDS             complement(1306..1488)
                     /locus_tag="ABGU63_RS25070"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_346714006.1"
                     /translation="MLTFDIGLSILHWCRVGKAEDNAEDNAEDNAEDNAEDNAEDNAED
                     NAEDNAEDNAEDNAG"
                     /name="hypothetical protein"
     Typing          395..626
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 atgtcagaag ataaattcct ttcggactac agcccccgtg atgcagtttg ggatacccag
       61 cgcacgctta ccgattctgt cgggggtatc taccagactg ctgctgaatt cgagcgctat
      121 gcactccgta tggcctcctg tagcggtttg ttacgttttg gttggtctac catcatggaa
      181 accggagaaa cgcgcctacg gcttcgtagt gcgcaatttt gccgtgtccg tcattgccct
      241 gtctgccagt ggagaagaac cctcatgtgg caagcccgtt tttatcaggc tctaccgaaa
      301 atcgttgtgg attacccgtc ttcccgatgg ttgtttctga cgttaactgt caggaactgc
      361 gagataggtg aacttggaac agtccttaca gcaatgaatg cggcgtttaa gcgaatggaa
      421 aagcgaaagg agctatcacc tgttcagggg tggatcaggg ctacggaggt gacgcgaggt
      481 aaggatggca gcgcacatcc gcattttcac tgtctgctga tggtgcaacc ttcttggttt
      541 aaagggaaga actacgttaa gcacgaacgt tgggtagaac tctggcgcga ttgcttgcgg
      601 gtgaactatg agccgaatat cgatattcgg gcagtaaaaa ctaagacagg tgaggttgtg
      661 gccaacgttg ccgagcaact gcaaagcgcg gttgctgaaa cgctgaaata ctccgttaaa
      721 ccggaagata tggcaaacga tcctgagtgg tttcttgagc tgacgcggca gcttcacaag
      781 cgccgtttta tctcgaccgg tggggcgcta aaaaacgtcc tccagttgga tcgagaaacc
      841 aatgaggatc ttgtcattgc cgacgatgta ggggatggca ctgatgacgg gaagcggacg
      901 gcgtttgtct gggattcagg taaacggcgt tacaaacgcg cccctgagaa ggataaatcg
      961 gattaacgta tgaatattaa tattgaatac ctgaatggaa ataagactat tggtttattt
     1021 tttttaagaa gtgaagcggt gattcctgac aggtttaaaa accttatttt gcttattgat
     1081 ggattaagtt ttggcacatt tggttttcat ccgcacgaag gttttgagga tgaattaatt
     1141 ttatatattc agaaaacaaa cgagagggta aaaactcttt ttgtgaaaat agatttaaac
     1201 ggtatcaagt ttggattttt aagaacgcat tcttagttct ggaaaagagc cagcggcagg
     1261 ctgaggtgat aggtacgaga ttgcatgcaa tctctagtgc tctgtctatc ctgcattatc
     1321 ctcagcatta tcctcagcat tatcctcagc attatcctca gcattatcct cagcattatc
     1381 ctcagcatta tcctcagcat tatcctcagc attatcctca gcattatcct cagccttgcc
     1441 aactcgacac caatgcagga tagacaatcc gatgtcaaat gttaacactc tgcgagtggt
     1501 acattttccc cggattatcg tcctgagcct gccgctggct ctctttctac cgcctcgctt
     1561 tgctcgttgc tcaacgcctc acagacacgg attaaaatcc gcatccgttc accgtttttt
     1621 aaagtccgtt aaaagcatga tgccatctcc gagagttaat ctcgtcaaat gctaaatcgt
     1681 gggggtcccc tttggggttc cgatttagtg attgacgaca ccaccgatta aaaaacttat
     1741 gcggggtgga tggtttcacg aagtgaggcc atccacctgt aagacagggt tttgttttta
     1801 ttccctgttt tggtgatcgg gtgtgtggaa aaggttgggg taagccgttc gggggtgctt
     1861 gttttggggg gttaaaattg tggttatttt ttgcgcaatt ctcgcgcgtg atccttgtat
     1921 ttatacttaa gggataaatg gcggatatga aatagtggtt tagcccagta atgacgaggc
     1981 tttgagtggg ttttgacagg tcaaagaaaa tggagcagaa ttgaggcgtt tttaatcggc
     2041 gttggggagt gcgtcaacac tccccaacat ttcgaatgtg tcacctcagc ggcaaactct
     2101 ggtgacatgt actggctcgc aatgcacagg tacgtgatga atataccaca tcaaatcaca
     2161 gcctgcccag atcggagcag gctta
//
