LOCUS       NZ_OY978175             5459 bp    DNA     circular CON 21-DEC-2023
DEFINITION  Klebsiella pneumoniae strain KP31122023BGR isolate KP31122023
            plasmid P_KP31122023_4, complete sequence.
ACCESSION   NZ_OY978175
VERSION     NZ_OY978175.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114785897
            Assembly: GCF_963854595.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Ivanov,I., Teneva,D. and Stoikov,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2023) NCIPD, CMAR, Yanko Sakazov 26 Sofia,
            Bulgaria
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/20/2023 23:54:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,637
            CDSs (total)                      :: 5,521
            Genes (coding)                    :: 5,310
            CDSs (with protein)               :: 5,310
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 8, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 8, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 211
            CDSs (without protein)            :: 211
            Pseudo Genes (ambiguous residues) :: 0 of 211
            Pseudo Genes (frameshifted)       :: 108 of 211
            Pseudo Genes (incomplete)         :: 109 of 211
            Pseudo Genes (internal stop)      :: 24 of 211
            Pseudo Genes (multiple problems)  :: 25 of 211
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY978175.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP31122023BGR"
                     /isolate="KP31122023"
                     /isolation_source="human urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P_KP31122023_4"
                     /geo_loc_name="Bulgaria"
                     /lat_lon="43.225887 N 27.936721 E"
                     /collection_date="2023-10-02"
     gene            1..149
                     /locus_tag="U9J20_RS28120"
                     /pseudo=""
     CDS             1..149
                     /locus_tag="U9J20_RS28120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            complement(457..1350)
                     /locus_tag="U9J20_RS28125"
                     /old_locus_tag="KP3112_27820"
     CDS             complement(457..1350)
                     /locus_tag="U9J20_RS28125"
                     /old_locus_tag="KP3112_27820"
                     /inference="COORDINATES: protein motif:HMM:NF024676.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="WP_071571084.1"
                     /translation="MLLTSFNDILKEDQTLAIRLAFIDFKVFYTGMLSRIDIMNEFDVS
                     EITASRVISQYREFRGGNISYDNKSKRFELKKDTYEPLVKFNAKDALRMLSEGFDKNYL
                     IRGRGFIPYEPIGFIQPPLENSFVSIITRAIAAGKKIKCQYNSATSNDSSYRVLSPLVI
                     LFDGRNWIFRAYHENSTSDVKYKNFNFARVVDVLSDDEFVDYEHGLAYDDLWNITLPVE
                     IEINKSFSDVKKNEVRRDFGIKDGADKVLMTERAAFIWIILNQWMVHYDDGKKMTDDYI
                     FCLKNAEMLRTYKAIR"
                     /name="WYL domain-containing protein"
     gene            1539..1709
                     /locus_tag="U9J20_RS28130"
     CDS             1539..1709
                     /locus_tag="U9J20_RS28130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018280556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086544399.1"
                     /translation="MAVNPPNDNRRIGMVRQRSQVFNPTTDTWVKRDSTTGRFMDVKSD
                     GTPFKGVRKEK"
                     /name="hypothetical protein"
     gene            1855..2118
                     /locus_tag="U9J20_RS28135"
     CDS             1855..2118
                     /locus_tag="U9J20_RS28135"
                     /inference="COORDINATES: protein motif:HMM:NF020550.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1883 domain-containing protein"
                     /protein_id="WP_071571085.1"
                     /translation="MQYQHYNLNNLSAGKVVEINLSGNAANVKLMDSSNFLNYKNGRPH
                     RYYGGYVTSSQTRLKVPCSGNWYVTIDLGGRSGRVSSSVNVY"
                     /name="DUF1883 domain-containing protein"
     gene            2137..2799
                     /locus_tag="U9J20_RS28140"
                     /old_locus_tag="KP3112_27825"
     CDS             2137..2799
                     /locus_tag="U9J20_RS28140"
                     /old_locus_tag="KP3112_27825"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071571086.1"
                     /translation="MKALVIFGSTARNERSFDSDIDMLGVYDKEKILSVSKESVNLFLY
                     PETTLREKMVSGDLFALHLVKESIPIYGSDIIKDIYSSFKYKESYIVEINTALKVSTEI
                     LSIYDKLRQHKSANKKIAWCLRTIIISISAQDRTPIFSKKKLSEYIKVTGFDSREILIL
                     INIKSISKKLPSRIINRISCLFNELYIYSDFHNYSYKQDILYQMLHDIDRNNNSINY"
                     /name="hypothetical protein"
     gene            2896..3486
                     /locus_tag="U9J20_RS28145"
                     /old_locus_tag="KP3112_27830"
     CDS             2896..3486
                     /locus_tag="U9J20_RS28145"
                     /old_locus_tag="KP3112_27830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_127429067.1"
                     /translation="MMTFDHGDGQLEFEGATLTLDHLKNRKITIQIDETSALVAEISCS
                     SHCYTDETPFTTTLLEIRDHYGNKRYFCPKRYELSKNIHTWLENCANEICIKRVLPSGT
                     IHWLIIEDHDSGEKVSIVFEIEKHKSIDNAVYMMVKAVHAFDRTPPPNPSERDVTFKVV
                     GSSYAKNDEAPPRAKKKRNRKRKRSTAETKKDS"
                     /name="hypothetical protein"
     gene            complement(4452..4853)
                     /locus_tag="U9J20_RS28150"
                     /old_locus_tag="KP3112_27835"
     CDS             complement(4452..4853)
                     /locus_tag="U9J20_RS28150"
                     /old_locus_tag="KP3112_27835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="WP_302008948.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKVGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="DNA-binding protein"
     gene            complement(4853..5044)
                     /locus_tag="U9J20_RS28155"
                     /old_locus_tag="KP3112_27840"
     CDS             complement(4853..5044)
                     /locus_tag="U9J20_RS28155"
                     /old_locus_tag="KP3112_27840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_321874737.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLTARLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2..109
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.364"
                     /coverage="98.0"
                     /evalue="8.230000000000001e-43"
     Typing          5166..5459
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.881"
                     /coverage="99.0"
                     /evalue="1.38e-117"
ORIGIN
        1 atgcacgaac cccccgttca gtccgactgc tgcgcctatc cggtaactat catcttgagt
       61 ccaacccggt aagacatgca aaagcgccac tggcagcagc cattggtaag agtcgatgtg
      121 cgagagattt tagagagtac ttgaagtgat ggccggacta cagctacact ggaagaacag
      181 ttttggtgac tcgtctcgca caagacagtt acctggttaa gcagcctgca agctggctta
      241 accttcgatc aaaccgccct gcaaggcggt tttttcgttt tcagagcaag agattacgcg
      301 ctgacagcaa tgatctcaag aagatcttcc aaggatctac ccaaaaaaag agcgtacaat
      361 ccatttacat cactatagaa ataatcctca cataaactta actcacttaa cgaatcacat
      421 ctcaatcaaa aaaaccaaac atgcccacaa atacagttat ctaatagcct tataagttcg
      481 tagcatttca gcatttttca gacaaaaaat ataatcatct gtcatttttt ttccatcatc
      541 gtaatgcacc atccattgat ttaatataat ccaaatgaaa gcagctcttt ccgtcattaa
      601 cactttatcg gccccatctt taataccaaa atcccttctc acttcgtttt ttttaacgtc
      661 actaaatgac ttatttattt cgatttcaac agggagtgtt atattccata aatcatcgta
      721 tgcaagccca tgttcataat caacaaactc atcatcactt aagacatcga caacacgagc
      781 aaagttaaag tttttatact ttacgtcact ggtcgaattc tcatggtagg ctctaaatat
      841 ccaattcctg ccatcaaaaa gaataacaag cggagaaaga actctataag aagaatcatt
      901 gctagtagca gagttatatt ggcacttaat tttttttcct gcggcaatag ctctagttat
      961 tatcgaaaca aaggagtttt caagaggtgg ctgaataaaa ccaataggtt cataaggaat
     1021 aaacccacgc cccctaatca aataattttt atcaaaccct tcggaaagca ttctcagcgc
     1081 atctttagca ttaaacttca ccaaaggctc gtatgtgtct ttttttaatt caaacctttt
     1141 acttttatta tcatacgata tattcccccc tctaaactcc ctgtattgag aaatcactct
     1201 tgaagctgtt atctcggaga cgtcaaactc attcataata tctattcttg ataacattcc
     1261 agtatagaaa actttgaaat ctataaatgc caatctaata gctaatgttt ggtcttcttt
     1321 aagaatgtca ttgaatgaag taagtaacat gatgcaacct tatctaatgc ataaacataa
     1381 ctattctagc ataagcaacc tgcaaaacgc atatcttttt gatatgcatt cagtacacac
     1441 aacaccaccc atatcggttg acaatcaaaa aaaacaggtt tacattggta tctgtcgaag
     1501 gaaatacctc cttcacagaa ggccttaagg aggctgaaat ggctgtaaat ccacctaatg
     1561 ataatcgtcg aattggcatg gttcgtcagc gttcacaggt tttcaaccca acgactgata
     1621 cctgggtaaa gcgtgactca acgaccgggc gcttcatgga tgtaaaatct gacggtacgc
     1681 ctttcaaggg cgtaaggaag gaaaaataaa gcggattgtc gtaagacaat ccgctttatt
     1741 tcgtttgaat gcactttctt ggggaagtta agtgcttaac cctagcaggc tgttgactac
     1801 aatctcaatt ttttgaattt aggtcaacag tctctttata caagagacca aattatgcaa
     1861 taccaacact acaatctgaa caatctttca gcaggaaaag tagttgaaat caatctttcc
     1921 ggaaatgctg caaacgttaa gctaatggat tctagcaact tcttgaacta taaaaatggc
     1981 cgcccgcatc gctattatgg cggatacgta acatcctcgc agacaaggct taaagttcct
     2041 tgctccggta actggtacgt aaccatagat ttaggtggcc gcagtggtcg cgtaagctca
     2101 agtgttaacg tatattaacc ttataaaagg cctctcatga aagcattagt aatttttggc
     2161 agcacagcta gaaatgagag gtcttttgat tcagatatag acatgcttgg tgtatatgac
     2221 aaggaaaaaa tactatctgt ttcaaaagag agcgtgaacc tttttttata tccagaaaca
     2281 accttacgcg aaaaaatggt ttctggtgat ttatttgcac tccacctagt aaaagaatca
     2341 attccaattt atggctctga tataatcaaa gacatataca gctcattcaa atataaagag
     2401 agttacatcg tagaaataaa taccgcactc aaagtttcca ccgagatatt atcaatttac
     2461 gataaattaa gacagcacaa gagtgccaat aaaaaaatcg catggtgttt acgcacgata
     2521 ataatttcaa tatcagcgca agatagaacc cctattttct ccaaaaaaaa actatccgag
     2581 tatataaagg taacaggatt cgattctagg gaaatactta tactcatcaa tataaaaagc
     2641 ataagtaaaa aattaccaag tagaataata aatagaattt catgtttatt taacgaacta
     2701 tatatatata gcgactttca taactatagt tataaacaag atattctata ccaaatgcta
     2761 catgatattg atagaaataa taatagcata aactactaaa aacaagctta cattatgaaa
     2821 agaagctagt gcaaatctaa attatacatt gcacaatagc atgaactaag aacagtccaa
     2881 aaatgggcaa atgacatgat gacatttgat cacggtgatg gccaattaga gtttgaggga
     2941 gcaacactca ccctagatca cctaaaaaat agaaaaataa ctatacagat tgatgagaca
     3001 tctgcactag tggcggaaat ttcgtgtagc tcacattgct acacagatga aacaccattc
     3061 acgacaactt tacttgagat tagagaccac tacggtaaca aacgttactt ttgccccaaa
     3121 agatatgagc taagcaaaaa catacatact tggttggaaa attgcgcaaa tgagatatgt
     3181 ataaaaagag tactcccaag tggaaccatt cactggttaa tcatcgagga tcatgattct
     3241 ggtgaaaaag taagcattgt gtttgagatt gagaaacata aaagtattga taatgctgta
     3301 tacatgatgg ttaaggctgt tcatgctttt gacagaaccc ccccgccaaa tccaagtgag
     3361 cgagatgtaa ctttcaaggt ggtaggttct tcctatgcca agaacgatga agcaccgccg
     3421 agagccaaga aaaaaagaaa tagaaagaga aaacgctcta cagcagaaac gaaaaaagac
     3481 tcctaggagt cttttttcgt ttaaagcttc gggtgcactt catatctcag gtgtctgagg
     3541 cctaagaatt actcttaggt ggctaatgga atactcttta gagtccccgc tcacatccat
     3601 ctacctagta gtatcagaaa aatgacgcca cctgtcaact ctacaataaa gatctccgaa
     3661 gtgaggcttc atacgctgac actacgtttt gcatactaat caacaagaac aacatttaac
     3721 ataacactct aattgtacgc accgctaaaa cggcctcagg gcgtttctga cgggaaaccg
     3781 gtaaaacagg caacaaacca cccgaaaacc cgccagaaac gcgcaggctc tgtttttacg
     3841 gcatgcatga gtatgcacgc aagtgcatag cgcgaaaatt cacgccattc agccagggta
     3901 agtcctgttt ccggcgtact tcccatccga aaacggtgaa cggggacgca atttattgcg
     3961 tggccgtgaa gcgttgccgg cgcagccgga aaaccggttt tcagcacgtt caggaatccg
     4021 gttcgtcgac ggccggcaat cacgttatgg caagtcaccg aacgactcac cacacgattc
     4081 accggcgact cttcactaga gtcgtaccca gagtcgccac gtctaaaaaa caaccaaacg
     4141 gggagtcggg tctagagtcg ggtcgttatt aactcattgt ttttatagtc ctgagtcgtt
     4201 accgactcta tgacgactcg ccggggactc tatgacgagt cgtcatagag tcggatctat
     4261 ataaatcaaa ttaaaaaaac gaaatttcac caacttaagc tactgatatt aaatacaaat
     4321 ccgcaaaatg ttaattttgc gtggggtgtg ggtattttta gtggtgagga gcgttcagag
     4381 atctgacgat ttttgggaag gttcaggaac tccccgggat ggccggagag gaaaactgaa
     4441 gcatgacggg gtcaggattt tttccagaat ttccaccatg gcgccgggga ttcagttaat
     4501 tttgcctggt gattttcgag aaggagcatg gcctgtttca ggctgtcaat gtgcgaatcc
     4561 ttggacaaaa gtaaggtatt caggtgttca atctcctgtt tcagatgacg aatcacctgt
     4621 tcactctggt cagcagaggc tgtatcacgc tgttcagaga cctgtccaga atggtgttca
     4681 cccttcggtt gctcaaaggg accaaagaca cgtaaaagct ctgaagtatc taccattttt
     4741 gcattgcgtt caccgctaca ggtggacagg tcacctactt taatcaacct gtgcagtgtt
     4801 gttctactct tacccgtcag tcgggcagcc tcactaatag acactctggc catcagttac
     4861 catcctgtaa ttcatccagt ctcgcggtca gtgtacggaa aagatgctcc gcatcatcgt
     4921 ggagtttctc acaaaggtcg gcttcgacat cgagatcaag ctcgttaagc ttctccagca
     4981 ggagcagaga ctgattctgg atgaatttag ccatgttcag cgctgttttc tgttgtttcg
     5041 tcataagagg cctcagagcg tcagtgctca gtgtagggat gtcctctttt ccgcttcctc
     5101 gctcactcag tcgctacgct cctgccgttc ggctgcggcg agcggcagga gcatgcgtag
     5161 aaacgctcga gaaaaccgag taatcgcatg gaggaaagaa ggaaaggccg ccgcgcggcc
     5221 gtttttccat aggctccgcc cccctgacaa gcatcacaga atctgacgct caaatcagtg
     5281 gtggcgaaac ccgacaggac tttaaagata ccaggcgttt ccccctggtg gctccctcgt
     5341 gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt
     5401 gtctcattcc acgcctgaca ctcagttccg ggaaggcagt tcgctccaag ctggactgt
//
